Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP24_F_P20
         (909 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    27   0.18 
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    27   0.18 
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    22   6.7  

>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 27.5 bits (58), Expect = 0.18
 Identities = 15/64 (23%), Positives = 30/64 (46%)
 Frame = +2

Query: 527 GLLEPTQERATPSTLRSEQSERKCVKSLHANVTNSELREVVNKVDS*LHCQGHRESLPWH 706
           G+     +     T   +QSE +   SLH+++    + E   +V+  +  QG+ E+   H
Sbjct: 174 GMKREAVQEERQRTKERDQSEVESTSSLHSDMPIERILEAEKRVECKMEQQGNYENAVSH 233

Query: 707 LPSA 718
           + +A
Sbjct: 234 ICNA 237


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 27.5 bits (58), Expect = 0.18
 Identities = 15/64 (23%), Positives = 30/64 (46%)
 Frame = +2

Query: 527 GLLEPTQERATPSTLRSEQSERKCVKSLHANVTNSELREVVNKVDS*LHCQGHRESLPWH 706
           G+     +     T   +QSE +   SLH+++    + E   +V+  +  QG+ E+   H
Sbjct: 174 GMKREAVQEERQRTKERDQSEVESTSSLHSDMPIERILEAEKRVECKMEQQGNYENAVSH 233

Query: 707 LPSA 718
           + +A
Sbjct: 234 ICNA 237


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = +3

Query: 507 CIGFTNKDSLSQRKNVLRPAHSGQSNQKEN 596
           C  F N+D+     N  +  HS +S+ + N
Sbjct: 414 CANFDNQDNNHYNHNHNQARHSSKSDNQNN 443


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 207,732
Number of Sequences: 438
Number of extensions: 4207
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29509116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)