Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP24_F_P18
         (884 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1851.03 |ckb1||CK2 family regulatory subunit |Schizosaccharo...   215   9e-57
SPBC2G5.02c |||CK2 family regulatory subunit |Schizosaccharomyce...   173   4e-44
SPBC725.17c |rrn11||RNA polymerase I transcription factor subuni...    27   4.7  
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo...    26   6.2  

>SPAC1851.03 |ckb1||CK2 family regulatory subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 231

 Score =  215 bits (524), Expect = 9e-57
 Identities = 95/181 (52%), Positives = 124/181 (68%)
 Frame = +3

Query: 132 FARFEAMSFSCEVDEDYINDKFNLTGLNEQVPHYREALDMXXXXXXXXXXXXXXXESDLV 311
           F   +   F CEVDED+I D+FNLTGL+ +VPHY ++LD+               E   V
Sbjct: 20  FLGLKGNEFFCEVDEDFIQDRFNLTGLSHEVPHYSQSLDLILDVLDPDLPEEVQDE---V 76

Query: 312 EQASEILYGLIHARYILTNRGISQMLDKFQSGDFGYCPRVYCECQPMLPIGLSDVPAEAM 491
           E ++  LYGLIHARYILT +G+ +ML+K++  DFG+CPRV C  QPMLP+GLSD+     
Sbjct: 77  EASARHLYGLIHARYILTAQGLYKMLEKYKKCDFGHCPRVLCNGQPMLPVGLSDIAHTKS 136

Query: 492 VKLYCPRCMDVYTPKSSRHHHTDGAYFGTGFPHMVFMVHPDKRPKRPASQFVPRLYGFKI 671
           VKLYCPRC DVYTPKS RH   DGAYFGT FPHM+F V+P+    +   +++PR++GFK+
Sbjct: 137 VKLYCPRCEDVYTPKSQRHASIDGAYFGTSFPHMLFQVYPELAVPKSQERYIPRIFGFKV 196

Query: 672 H 674
           H
Sbjct: 197 H 197



 Score = 29.5 bits (63), Expect = 0.67
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +2

Query: 101 SSEEVSWIAWFCTLRGNEFF 160
           S +   W+ WF  L+GNEFF
Sbjct: 10  SDDSQYWVDWFLGLKGNEFF 29


>SPBC2G5.02c |||CK2 family regulatory subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 254

 Score =  173 bits (420), Expect = 4e-44
 Identities = 82/176 (46%), Positives = 112/176 (63%), Gaps = 3/176 (1%)
 Frame = +3

Query: 165 EVDEDYINDKFNLTGLNEQVPHYREALDMXXXXXXXXXXXXXXXESDLVEQASEILYGLI 344
           EV ED+I D FNLTGLN  VP Y EALD+               + D++E +++ILYGLI
Sbjct: 56  EVKEDFIEDLFNLTGLNLAVPFYNEALDLILDRTAPDTLENF--DMDVIETSAQILYGLI 113

Query: 345 HARYILTNRGISQMLDKFQSGDFGYCPRVYCECQPMLPIGLSDVPAEAMVKLYCPRCMDV 524
           H RYI+T  G+ QM +K+  G FG CPRV C    +LP GLSD+  +  V L+CP C+D+
Sbjct: 114 HQRYIITRTGLHQMAEKYSMGIFGCCPRVNCCYTHVLPAGLSDIVGKMPVMLFCPNCLDL 173

Query: 525 YTPKSSRHHHTDGAYFGTGFPHMVFMVHPDKRPKR--PASQ-FVPRLYGFKIHPLA 683
           Y P SSR+ + DG++FG  FPH+ F  +P+  PKR  P  + + PR+YGFK+  L+
Sbjct: 174 YAPSSSRYKNIDGSFFGATFPHLFFESYPELNPKRSIPCGKIYQPRIYGFKVSELS 229



 Score = 33.5 bits (73), Expect = 0.041
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = +2

Query: 107 EEVSWIAWFCTLRGNEFFL 163
           E VSWI+WFC+  G E+F+
Sbjct: 37  ENVSWISWFCSRPGREYFV 55


>SPBC725.17c |rrn11||RNA polymerase I transcription factor subunit
           Rrn11 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 200

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
 Frame = -3

Query: 270 LAPDPESC-----PAPLYNVELAHLSRLD*IYHLCSLRQPHKKNS 151
           +AP+PES      P P    +  H+  L  + HLC LR+ + + S
Sbjct: 17  VAPNPESSVIPPIPLPSRRYKTRHIDALCSLMHLCLLRKDYPRAS 61


>SPBC12C2.02c |ste20|ste16|sterility protein
           Ste20|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1309

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -2

Query: 424 GQYPKSPDWNLSNI*LMPLLVNMYRACI 341
           G+ P S   N S   L P L N+Y+AC+
Sbjct: 199 GKRPSSLQSNFSQFPLNPWLDNIYKACL 226


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,533,875
Number of Sequences: 5004
Number of extensions: 73635
Number of successful extensions: 169
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)