Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP24_F_P17
         (867 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17C9.07 |alg8||glucosyltransferase Alg8|Schizosaccharomyces ...    29   1.1  
SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large...    26   8.0  

>SPAC17C9.07 |alg8||glucosyltransferase Alg8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 501

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = +1

Query: 76  VMLRSVLFLTTGFLFAACLTSVMSDKPTTKPICEQAFGNSGPCFAYIKLY 225
           +++  + F   GFLF   L S++  KP    +   A  ++  CF +I LY
Sbjct: 145 LIIDHIHFQYNGFLFGLLLWSIVLAKPEKNMLLSAAIFSALICFKHIFLY 194


>SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large
           subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1405

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = -3

Query: 727 QTASPRALADSLMQKNLPHLPLNLKHKMNAIVVGNLF 617
           Q  S + + D    ++LPH   N KH +    V N F
Sbjct: 796 QIISGKRVPDGFQDRSLPHFHKNSKHPLAKGFVSNSF 832


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,756,862
Number of Sequences: 5004
Number of extensions: 47491
Number of successful extensions: 122
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 432473040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)