Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP24_F_P15
         (969 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076           30   3.2  
07_01_0479 + 3606663-3607448                                           28   9.7  

>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
          Length = 906

 Score = 29.9 bits (64), Expect = 3.2
 Identities = 15/46 (32%), Positives = 15/46 (32%)
 Frame = +2

Query: 761 GGXXPRGXPPGXGXXXXXPXPLXXXXSPSGXXGGXXPXXPPPXGXP 898
           G     G PP        P P     SPS    G  P  PPP   P
Sbjct: 313 GAGAGTGAPPPPPAHPAAPAPPPPAPSPSAAGAGSGPPPPPPPAAP 358


>07_01_0479 + 3606663-3607448
          Length = 261

 Score = 28.3 bits (60), Expect = 9.7
 Identities = 39/177 (22%), Positives = 50/177 (28%)
 Frame = +2

Query: 431 GPXAGXGGXGMGRXSXSSLXDXXXXXVRLXXTGISPPXXGXXGXXXXXGXPXXXHVXKRP 610
           G  A   G G+GR +   +        +    G++ P  G  G       P        P
Sbjct: 99  GAGAAMAGPGVGRAAGRGVPAGQMLQAQ---PGLAGPVRGVGGPAPGMMQPQISR-PPMP 154

Query: 611 XXGXXPXKGPLXXRXXXGSAPPTSXXXXGRSXXRWRXPAGAXKXXGRVXPGGXXPRGXPP 790
                P   P   R   G  PP       +    ++ P G       V P    P G PP
Sbjct: 155 NLSAPPVAYPQVVRPPPGQMPPPMRPP--QMPIPFQRPPG-------VPPA--FPGGPPP 203

Query: 791 GXGXXXXXPXPLXXXXSPSGXXGGXXPXXPPPXGXPXXXXLVXFXPXXXGXXXXNPP 961
             G     P P+       G  GG  P   P    P     +   P        NPP
Sbjct: 204 PPGPFMRGPPPMGPPQVRPGMPGGPPPGMRPGMPPPPFRPGMPPPPPGPQQPGQNPP 260


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,983,893
Number of Sequences: 37544
Number of extensions: 189417
Number of successful extensions: 210
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 205
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2811537600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)