Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP24_F_P15
(969 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 32 0.71
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 32 0.71
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 32 0.71
U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequen... 30 2.2
AL117203-6|CAB60419.1| 234|Caenorhabditis elegans Hypothetical ... 30 2.2
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 31.9 bits (69), Expect = 0.71
Identities = 16/49 (32%), Positives = 17/49 (34%)
Frame = +3
Query: 822 PXPAVGPXPGXXGGXXXXXPPXXVXPXXGXWXXSAPXXGGXXXXTPPXP 968
P P G P GG PP + P G P GG PP P
Sbjct: 728 PPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPP 776
Score = 28.3 bits (60), Expect = 8.7
Identities = 15/46 (32%), Positives = 15/46 (32%)
Frame = +2
Query: 761 GGXXPRGXPPGXGXXXXXPXPLXXXXSPSGXXGGXXPXXPPPXGXP 898
GG P P G P P GG P PPP G P
Sbjct: 724 GGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCP 769
Score = 28.3 bits (60), Expect = 8.7
Identities = 17/58 (29%), Positives = 19/58 (32%), Gaps = 1/58 (1%)
Frame = +2
Query: 758 PGGXXP-RGXPPGXGXXXXXPXPLXXXXSPSGXXGGXXPXXPPPXGXPXXXXLVXFXP 928
PGG P G PP P P G GG P PP P + + P
Sbjct: 748 PGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPPGMFAPMAPVIPDYLP 805
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 31.9 bits (69), Expect = 0.71
Identities = 16/49 (32%), Positives = 17/49 (34%)
Frame = +3
Query: 822 PXPAVGPXPGXXGGXXXXXPPXXVXPXXGXWXXSAPXXGGXXXXTPPXP 968
P P G P GG PP + P G P GG PP P
Sbjct: 728 PPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPP 776
Score = 28.3 bits (60), Expect = 8.7
Identities = 15/46 (32%), Positives = 15/46 (32%)
Frame = +2
Query: 761 GGXXPRGXPPGXGXXXXXPXPLXXXXSPSGXXGGXXPXXPPPXGXP 898
GG P P G P P GG P PPP G P
Sbjct: 724 GGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCP 769
Score = 28.3 bits (60), Expect = 8.7
Identities = 17/58 (29%), Positives = 19/58 (32%), Gaps = 1/58 (1%)
Frame = +2
Query: 758 PGGXXP-RGXPPGXGXXXXXPXPLXXXXSPSGXXGGXXPXXPPPXGXPXXXXLVXFXP 928
PGG P G PP P P G GG P PP P + + P
Sbjct: 748 PGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPPGMFAPMAPVIPDYLP 805
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 31.9 bits (69), Expect = 0.71
Identities = 16/49 (32%), Positives = 17/49 (34%)
Frame = +3
Query: 822 PXPAVGPXPGXXGGXXXXXPPXXVXPXXGXWXXSAPXXGGXXXXTPPXP 968
P P G P GG PP + P G P GG PP P
Sbjct: 311 PPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPP 359
Score = 28.3 bits (60), Expect = 8.7
Identities = 15/46 (32%), Positives = 15/46 (32%)
Frame = +2
Query: 761 GGXXPRGXPPGXGXXXXXPXPLXXXXSPSGXXGGXXPXXPPPXGXP 898
GG P P G P P GG P PPP G P
Sbjct: 307 GGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCP 352
Score = 28.3 bits (60), Expect = 8.7
Identities = 17/58 (29%), Positives = 19/58 (32%), Gaps = 1/58 (1%)
Frame = +2
Query: 758 PGGXXP-RGXPPGXGXXXXXPXPLXXXXSPSGXXGGXXPXXPPPXGXPXXXXLVXFXP 928
PGG P G PP P P G GG P PP P + + P
Sbjct: 331 PGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPPGMFAPMAPVIPDYLP 388
>U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequence
x-hybridizingprotein 1 protein.
Length = 589
Score = 30.3 bits (65), Expect = 2.2
Identities = 33/130 (25%), Positives = 36/130 (27%), Gaps = 8/130 (6%)
Frame = +2
Query: 533 SPPXXGXXGXXXXXGXPXXXHVXKRPXXGXXPXKGPLXXRXXXGSAPPTSXXXXGRSXXR 712
+PP G G G P P G APP S G
Sbjct: 160 APPSGGPPGLFDPSGAPPSGGPPGPFGPSGAPPSGGPPGPFNPSEAPP-SGGPTGPFDPS 218
Query: 713 WRXPAGAXKXXGRVXPGGXXPRGXPP------GXGXXXXXPXPLXXXXSP--SGXXGGXX 868
P+G G P G P G PP G P P +P G G
Sbjct: 219 GAPPSGGPP--GPFNPSGAPPSGGPPGPFDPSGAPPSGGPPGPFNPSGAPPSGGPPGPFD 276
Query: 869 PXXPPPXGXP 898
P PP G P
Sbjct: 277 PSGAPPSGGP 286
Score = 30.3 bits (65), Expect = 2.2
Identities = 33/130 (25%), Positives = 36/130 (27%), Gaps = 8/130 (6%)
Frame = +2
Query: 533 SPPXXGXXGXXXXXGXPXXXHVXKRPXXGXXPXKGPLXXRXXXGSAPPTSXXXXGRSXXR 712
+PP G G G P P G APP S G
Sbjct: 250 APPSGGPPGPFNPSGAPPSGGPPGPFDPSGAPPSGGPPGPFDPSGAPP-SGGPPGPFDPS 308
Query: 713 WRXPAGAXKXXGRVXPGGXXPRGXPP------GXGXXXXXPXPLXXXXSP--SGXXGGXX 868
P+G G P G P G PP G P P +P G G
Sbjct: 309 GAQPSGGPP--GPFNPSGAPPSGGPPGPFDPSGAPPSGGPPGPFNPSGAPPSGGPPGPFD 366
Query: 869 PXXPPPXGXP 898
P PP G P
Sbjct: 367 PSGAPPSGGP 376
Score = 30.3 bits (65), Expect = 2.2
Identities = 33/130 (25%), Positives = 36/130 (27%), Gaps = 8/130 (6%)
Frame = +2
Query: 533 SPPXXGXXGXXXXXGXPXXXHVXKRPXXGXXPXKGPLXXRXXXGSAPPTSXXXXGRSXXR 712
+PP G G G P P G APP S G
Sbjct: 340 APPSGGPPGPFNPSGAPPSGGPPGPFDPSGAPPSGGPPGPFDPSGAPP-SGGPPGPFDPS 398
Query: 713 WRXPAGAXKXXGRVXPGGXXPRGXPP------GXGXXXXXPXPLXXXXSP--SGXXGGXX 868
P+G G P G P G PP G P P +P G G
Sbjct: 399 GAPPSGGPP--GPFNPSGAPPSGGPPGPFNPSGAPPSGGPPGPFNPSGAPPSGGPPGPFN 456
Query: 869 PXXPPPXGXP 898
P PP G P
Sbjct: 457 PSGAPPSGGP 466
Score = 30.3 bits (65), Expect = 2.2
Identities = 33/130 (25%), Positives = 36/130 (27%), Gaps = 8/130 (6%)
Frame = +2
Query: 533 SPPXXGXXGXXXXXGXPXXXHVXKRPXXGXXPXKGPLXXRXXXGSAPPTSXXXXGRSXXR 712
+PP G G G P P G APP S G
Sbjct: 385 APPSGGPPGPFDPSGAPPSGGPPGPFNPSGAPPSGGPPGPFNPSGAPP-SGGPPGPFNPS 443
Query: 713 WRXPAGAXKXXGRVXPGGXXPRGXPP------GXGXXXXXPXPLXXXXSP--SGXXGGXX 868
P+G G P G P G PP G P P +P G G
Sbjct: 444 GAPPSGGPP--GPFNPSGAPPSGGPPGPFNPSGAPPSGGPPGPFDPSGAPPSGGPPGPFN 501
Query: 869 PXXPPPXGXP 898
P PP G P
Sbjct: 502 PSGAPPSGGP 511
Score = 29.5 bits (63), Expect = 3.8
Identities = 36/131 (27%), Positives = 39/131 (29%), Gaps = 9/131 (6%)
Frame = +2
Query: 533 SPPXXGXXGXXXXXGX-PXXXHVXKRPXXGXXPXKGPLXXRXXXGSAPPTSXXXXGRSXX 709
+PP G G G P G P GP G APP S G
Sbjct: 295 APPSGGPPGPFDPSGAQPSGGPPGPFNPSGAPPSGGPPGPFDPSG-APP-SGGPPGPFNP 352
Query: 710 RWRXPAGAXKXXGRVXPGGXXPRGXPP------GXGXXXXXPXPLXXXXSP--SGXXGGX 865
P+G G P G P G PP G P P +P G G
Sbjct: 353 SGAPPSGGPP--GPFDPSGAPPSGGPPGPFDPSGAPPSGGPPGPFDPSGAPPSGGPPGPF 410
Query: 866 XPXXPPPXGXP 898
P PP G P
Sbjct: 411 NPSGAPPSGGP 421
Score = 28.7 bits (61), Expect = 6.6
Identities = 32/126 (25%), Positives = 34/126 (26%), Gaps = 4/126 (3%)
Frame = +2
Query: 533 SPPXXGXXGXXXXXGXPXXXHVXKRPXXGXXPXKGPLXXRXXXGSAPPTSXXXXGRSXXR 712
+PP G G G P P G APP S G
Sbjct: 205 APPSGGPTGPFDPSGAPPSGGPPGPFNPSGAPPSGGPPGPFDPSGAPP-SGGPPGPFNPS 263
Query: 713 WRXPAGAXKXXGRVXPGGXXPRGXPPGXGXXXXXPXPLXXXXSPSGXXGGXXPXXPP--- 883
P+G G P G P G PPG P P P G PP
Sbjct: 264 GAPPSGGPP--GPFDPSGAPPSGGPPGPFDPSGAP-PSGGPPGPFDPSGAQPSGGPPGPF 320
Query: 884 -PXGXP 898
P G P
Sbjct: 321 NPSGAP 326
Score = 28.3 bits (60), Expect = 8.7
Identities = 23/93 (24%), Positives = 27/93 (29%)
Frame = +2
Query: 605 RPXXGXXPXKGPLXXRXXXGSAPPTSXXXXGRSXXRWRXPAGAXKXXGRVXPGGXXPRGX 784
RP P + P +A G+ P+G G P G P G
Sbjct: 108 RPTRLPRPSRSPHSDAPEPSAATDGFELVFGKHHSTGAPPSGGPP--GPFDPSGAPPSGG 165
Query: 785 PPGXGXXXXXPXPLXXXXSPSGXXGGXXPXXPP 883
PPG P P P G G PP
Sbjct: 166 PPGLFDPSGAP-PSGGPPGPFGPSGAPPSGGPP 197
Score = 28.3 bits (60), Expect = 8.7
Identities = 31/107 (28%), Positives = 33/107 (30%), Gaps = 8/107 (7%)
Frame = +2
Query: 602 KRPXXGXXPXKGPLXXRXXXGSAPPTSXXXXGRSXXRWRXPAGAXKXXGRVXPGGXXPRG 781
K G P GP G APP S G P+G G P G P G
Sbjct: 139 KHHSTGAPPSGGPPGPFDPSG-APP-SGGPPGLFDPSGAPPSGGPP--GPFGPSGAPPSG 194
Query: 782 XPPGXGXXXXXP------XPLXXXXSP--SGXXGGXXPXXPPPXGXP 898
PPG P P +P G G P PP G P
Sbjct: 195 GPPGPFNPSEAPPSGGPTGPFDPSGAPPSGGPPGPFNPSGAPPSGGP 241
>AL117203-6|CAB60419.1| 234|Caenorhabditis elegans Hypothetical
protein Y48C3A.9 protein.
Length = 234
Score = 30.3 bits (65), Expect = 2.2
Identities = 19/51 (37%), Positives = 22/51 (43%)
Frame = +2
Query: 746 GRVXPGGXXPRGXPPGXGXXXXXPXPLXXXXSPSGXXGGXXPXXPPPXGXP 898
GR+ PG P G PPG P P +P+ G P PPP G P
Sbjct: 141 GRMPPGAMAPGGMPPG-AFPMFPPDPRLQRMAPN--QGMRMP--PPPVGQP 186
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,437,228
Number of Sequences: 27780
Number of extensions: 140633
Number of successful extensions: 302
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 275
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2510937120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -