Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP24_F_P13
         (891 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces pomb...    27   2.7  
SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces...    27   2.7  
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces...    27   4.7  
SPBC776.06c |||spindle pole body interacting protein |Schizosacc...    27   4.7  

>SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1095

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = -2

Query: 167 SEDEG*DLCEIHCKFI*IQTRTLRHKRRCTDHLMCNYQECQILRIPY 27
           SE +G +   +H + + I+T TL  K   T+ L+C   E +    PY
Sbjct: 655 SEQDGWEFIPVHGQQVGIRTSTLEDKCTATEMLVCYAAELKADFDPY 701


>SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 567

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 20/79 (25%), Positives = 35/79 (44%)
 Frame = +1

Query: 523 RCSFTPF*FETNVCYQKFVVTSTVSARIGLGTANARSPSLIDSNIIDLIARSIAWHYPRI 702
           R S  P   + N   +  V  + +S     GT+NA +PS + SN   + + + A   P  
Sbjct: 3   RESLAPIASKANTLSESKVSENLMSINSDSGTSNANTPSSVTSNSKPVASSTAAKKDPN- 61

Query: 703 KSPRVVFENMCSLLLGSFS 759
             P+ V + +C     +F+
Sbjct: 62  APPQKVKQYVCETCTRAFA 80


>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 897

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +1

Query: 646 DSNIIDLIARSIAWHYPRIKSPRVVFENMCSLLLGSFSTEMQPSF 780
           DSN +     +    Y   K P  V+ N+ + L GSF   +QP+F
Sbjct: 364 DSNFLSYYFSASGPMYVPQKCPATVYNNLLNFLEGSF--HLQPNF 406


>SPBC776.06c |||spindle pole body interacting protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 598

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 3/74 (4%)
 Frame = -1

Query: 726 FKNHPRRLYTWIMPGDRAR-NQIDYIAID-KRWRSCISSAKTYP-GADCGSDHKLLVADI 556
           +K++  + + W    D  + N++ Y+A   + WR   S+ K Y     C S   L   DI
Sbjct: 456 YKDYKFKGFGWSWDNDDEKVNELLYLAPKFEAWRQA-STYKDYCYRLHCASTPVLRCMDI 514

Query: 555 SLKLKRCKRTSLST 514
              L R + +SLST
Sbjct: 515 QFHLDRLRNSSLST 528


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,403,259
Number of Sequences: 5004
Number of extensions: 67824
Number of successful extensions: 146
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)