Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP24_F_P13
         (891 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   2.8  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   3.7  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    23   4.9  
AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.         23   4.9  

>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +1

Query: 688 HYPRIKSPRVVFE 726
           H+PR K PR  FE
Sbjct: 155 HHPRYKRPRTTFE 167


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -2

Query: 239 TYNFLEDLPPGLGSSTGHAQSQH 171
           +YN L+ LP GL +ST   +  H
Sbjct: 269 SYNSLDSLPEGLFASTRDLREIH 291


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +3

Query: 9   TPPX*LIGNP*DLTFLIVAHQVISTAPLVS 98
           +PP  ++G    LTF+ +A +V ++ P VS
Sbjct: 260 SPPRIVLGTNTILTFMTLASKVENSLPKVS 289


>AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.
          Length = 104

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -1

Query: 216 STWAREQHWSCSKPAPERRRRIGSLRNSL 130
           S W    H +C+     +RR+ GS RN +
Sbjct: 71  SKWLSINHSACAIRCLAQRRKGGSCRNGV 99


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 230,917
Number of Sequences: 438
Number of extensions: 4518
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28783482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)