Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP24_F_P12
         (879 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom...    31   0.29 
SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual     29   0.87 
SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2 |Schizosacc...    28   2.0  
SPAPYUG7.02c |sin1||stress activated MAP kinase interacting prot...    27   3.5  
SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|c...    27   3.5  
SPAC1039.04 |||nicotinic acid plasma membrane transporter |Schiz...    27   4.7  
SPBC354.01 |gtp1|SPBC649.06|GTP binding protein Gtp1|Schizosacch...    27   4.7  
SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint compone...    27   4.7  
SPCC4G3.09c |gyp3||GTPase activating protein Gyp3|Schizosaccharo...    26   6.1  
SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces pom...    26   6.1  
SPAC23C11.12 |hcn1||anaphase-promoting complex subunit Hcn1|Schi...    26   8.1  
SPAC23D3.03c |||GTPase activating protein |Schizosaccharomyces p...    26   8.1  

>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 204

 Score = 30.7 bits (66), Expect = 0.29
 Identities = 27/83 (32%), Positives = 37/83 (44%), Gaps = 7/83 (8%)
 Frame = -1

Query: 648 WYSCWNDRH---FS*QDSSFSADPSWGPTVWMIYLAGKL*PPVTL---ASPVGHPPIESH 487
           W + W++R+   F   +S   A P W   V  + +     PP ++   A P G PP  S+
Sbjct: 13  WVAQWDERYKCYFYVNESDPKAKPQWECPVRGLTIP----PPPSVDHSAPPSGPPPSYSN 68

Query: 486 SACKKGPAARC-MAPSTPPPAFS 421
           SA    PAA    A   P PA S
Sbjct: 69  SAAPATPAASASSAAPAPAPAAS 91


>SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 366

 Score = 29.1 bits (62), Expect = 0.87
 Identities = 15/55 (27%), Positives = 27/55 (49%)
 Frame = +2

Query: 278 STTDDLKEFEKIKINTEKNKSISERVSIFKGDITKLEIDAIVNAANSRLKAGGGV 442
           +T   +KE E     T+KNK+ ++ + + K  + KL+ + I          GGG+
Sbjct: 3   TTAQKIKEVEDEMAKTQKNKATAKHLGMLKAKLAKLKRELITPTGGG---GGGGL 54


>SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 830

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
 Frame = -1

Query: 501 PIESHSACKKGPAARCMAPSTPPPAFSLELA-AFTIASISSLVMSPLKIETRSEMDL 334
           P ES ++   G     + PS+PPP FS E A A     I  L    L +E     DL
Sbjct: 16  PFESENS-SLGATPLSLPPSSPPPEFSDEAAEALVEEDIEDLDGEALDVEDEEGEDL 71


>SPAPYUG7.02c |sin1||stress activated MAP kinase interacting protein
           Sin1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 11/42 (26%), Positives = 24/42 (57%)
 Frame = +2

Query: 245 LNKSQGIDSKKSTTDDLKEFEKIKINTEKNKSISERVSIFKG 370
           +NK++ + + K+ T  L+   + K N+ +N  ++E  + F G
Sbjct: 242 VNKARSVSNAKAPTSALRALLEHKENSSQNGPLAENFATFSG 283


>SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 432

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 19/66 (28%), Positives = 33/66 (50%)
 Frame = +2

Query: 245 LNKSQGIDSKKSTTDDLKEFEKIKINTEKNKSISERVSIFKGDITKLEIDAIVNAANSRL 424
           L KS G   K S     K  ++ + + E+N+  +  V + +  ITKLE +  V     ++
Sbjct: 355 LEKSIGDTLKSSIRSSPKSKKRSREDFEENEDYNAMVPVKRSRITKLESE--VYYEKRKV 412

Query: 425 KAGGGV 442
           +A GG+
Sbjct: 413 RALGGI 418


>SPAC1039.04 |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 12/39 (30%), Positives = 24/39 (61%)
 Frame = +2

Query: 263 IDSKKSTTDDLKEFEKIKINTEKNKSISERVSIFKGDIT 379
           +++    TD+ K   K++I  + + +ISE++S FK  +T
Sbjct: 245 VETANFLTDEEKTLAKMRIENDSSSAISEKLS-FKQSLT 282


>SPBC354.01 |gtp1|SPBC649.06|GTP binding protein
           Gtp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 13/50 (26%), Positives = 23/50 (46%)
 Frame = +2

Query: 287 DDLKEFEKIKINTEKNKSISERVSIFKGDITKLEIDAIVNAANSRLKAGG 436
           + ++E E     T+KNK+    + + KG + KL    +   + S  K  G
Sbjct: 5   EKIQEIEAEMRRTQKNKATEYHLGLLKGKLAKLRAQLLEPTSKSGPKGEG 54


>SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint component
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 809

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 12/41 (29%), Positives = 27/41 (65%)
 Frame = +2

Query: 263 IDSKKSTTDDLKEFEKIKINTEKNKSISERVSIFKGDITKL 385
           ++S K   ++L+E  ++K+  E+N S+ +++S  KG++  L
Sbjct: 652 LESLKRENEELRE--QLKVEHEENISMQKQLSELKGELNTL 690


>SPCC4G3.09c |gyp3||GTPase activating protein
           Gyp3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 635

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +2

Query: 626 LSFQQEYQIKSIAFPVYIHWNLRFSESSRSTHSATYS 736
           LS + E+ + ++ +P+Y H N+   E++    S T S
Sbjct: 76  LSSESEHALDALVYPIYSHHNILEHENNSDYASITPS 112


>SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 659

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 15/51 (29%), Positives = 29/51 (56%)
 Frame = +2

Query: 236 SKYLNKSQGIDSKKSTTDDLKEFEKIKINTEKNKSISERVSIFKGDITKLE 388
           S YL++ + ++S  + ++ L +  K ++   K KSIS+     K +I +LE
Sbjct: 224 SNYLSRIEMLESSLAKSNSLLDSSKSEMEALKAKSISDATK-HKNEIFQLE 273


>SPAC23C11.12 |hcn1||anaphase-promoting complex subunit
           Hcn1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 80

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -2

Query: 710 ETIRKTVNSSGYTPEKRSILFGIPVGMTGIFRS 612
           E ++K   S+  +PEK+ I+    +G+T IF S
Sbjct: 36  EALQKNEESTRLSPEKKKIIRERRIGITQIFDS 68


>SPAC23D3.03c |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 472

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 15/54 (27%), Positives = 29/54 (53%)
 Frame = +2

Query: 239 KYLNKSQGIDSKKSTTDDLKEFEKIKINTEKNKSISERVSIFKGDITKLEIDAI 400
           K++ + + I       D  K+ EKIK+  +KNK     V++++ +I +   DA+
Sbjct: 150 KHMREFEQIKKSAMRYDRQKQKEKIKMVEQKNKRNLYLVNVWEREILRNWPDAL 203


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,373,140
Number of Sequences: 5004
Number of extensions: 69543
Number of successful extensions: 257
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 240
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 257
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)