Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP24_F_P12
(879 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0359 - 2805094-2805175,2805256-2805347,2805443-2805517,280... 88 8e-18
03_02_0926 + 12448032-12448231,12448727-12448815,12449956-124500... 80 2e-15
10_08_0180 + 15502809-15503312,15503399-15503454,15503934-155040... 69 5e-12
03_02_0651 + 10183050-10184167,10184350-10184974,10185023-101852... 43 4e-04
09_04_0081 - 14400293-14400397,14400953-14401036,14401144-144012... 31 0.92
11_04_0168 + 14391244-14391325,14392132-14392155,14392256-143923... 31 1.6
06_01_0931 + 7192519-7194075 31 1.6
05_01_0192 + 1394342-1396645 30 2.1
07_03_1107 - 24024387-24024497,24025799-24026410 29 4.9
11_03_0035 - 9130678-9130887,9130963-9131255,9132328-9132604 29 6.5
>03_01_0359 -
2805094-2805175,2805256-2805347,2805443-2805517,
2805582-2805675,2805769-2805872,2806777-2806885,
2807397-2807609,2808170-2808289,2809060-2809115,
2809210-2809287,2809374-2809733
Length = 460
Score = 88.2 bits (209), Expect = 8e-18
Identities = 45/118 (38%), Positives = 67/118 (56%), Gaps = 6/118 (5%)
Frame = +2
Query: 341 ISERVSIFKGDITKLEIDAIVNAANSRLKAGGGVDGAIHRAAGPFLQAECDSIGGCPTGD 520
I+ ++ +++G LE+DA+VN+ N L G +H AAGP L EC ++GGC TG
Sbjct: 95 INSKICLWRGHPWNLEVDAVVNSTNENLDEAHSSPG-LHAAAGPGLAEECTTLGGCRTGM 153
Query: 521 AKVTGGYNLPAKYIIHTVGPQ------DGSAEKLESCYEKCLSFQQEYQIKSIAFPVY 676
AK+T Y+LPA+ +IHTVGP+ + L CY CL E ++ + P+Y
Sbjct: 154 AKMTNAYDLPARKVIHTVGPKYAVKYHTAAENALSHCYRSCLELLIENGLERL-LPLY 210
>03_02_0926 +
12448032-12448231,12448727-12448815,12449956-12450096,
12450181-12450283,12450386-12450481,12450580-12450654,
12450754-12450823,12451028-12451111
Length = 285
Score = 80.2 bits (189), Expect = 2e-15
Identities = 50/121 (41%), Positives = 66/121 (54%), Gaps = 10/121 (8%)
Frame = +2
Query: 338 SISERVSIFKGDITKLEIDAIVNAANSRLKAGGGVDGAIHRAAGPFLQAECDSI----GG 505
S S+ +S+ +T + I VNAAN R+ GGGVDGAIHR AGP L C + G
Sbjct: 108 SNSDYLSMTMKKMTVIHISQ-VNAANERMLGGGGVDGAIHRTAGPELVEACRKVPEVKSG 166
Query: 506 --CPTGDAKVTGGYNLPAKYIIHTVGP---QDGSAE-KLESCYEKCLSFQQEYQIKSIAF 667
CPTG+A++T + LP +IHTVGP D E L + Y L ++ I+ IA
Sbjct: 167 VRCPTGEARITPAFKLPVSRVIHTVGPIYDMDKQPEVSLNNAYTNSLKLAKQNGIQYIAL 226
Query: 668 P 670
P
Sbjct: 227 P 227
>10_08_0180 +
15502809-15503312,15503399-15503454,15503934-15504053,
15504190-15504260,15504603-15504696,15504772-15504978,
15505406-15505657,15505781-15505889,15506112-15506179,
15506278-15506347,15506429-15506503,15506600-15506691,
15506779-15506860
Length = 599
Score = 68.9 bits (161), Expect = 5e-12
Identities = 34/77 (44%), Positives = 45/77 (58%), Gaps = 6/77 (7%)
Frame = +2
Query: 452 IHRAAGPFLQAECDSIGGCPTGDAKVTGGYNLPAKYIIHTVGPQ------DGSAEKLESC 613
+H AAG L EC ++GGC TG AK+T Y+LPA+ +IHTVGP+ + L C
Sbjct: 153 LHAAAGSGLAEECSTLGGCRTGMAKMTNAYDLPARKVIHTVGPKYAVKYHTAAENALSHC 212
Query: 614 YEKCLSFQQEYQIKSIA 664
Y CL E ++SIA
Sbjct: 213 YRSCLELLIENGLESIA 229
Score = 45.2 bits (102), Expect = 7e-05
Identities = 21/51 (41%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Frame = +3
Query: 672 CISTGIYGFPNRLAAHIALRTARKFLE-TNTEMNRIIFCTFLPIDVEITRR 821
CI T +P AAH+A+RT R+FLE +++ ++FCT D EI +R
Sbjct: 232 CIYTEAKNYPREPAAHVAIRTVRRFLEKQKSKIAGVVFCTVSSSDTEIYKR 282
>03_02_0651 +
10183050-10184167,10184350-10184974,10185023-10185208,
10185325-10185660
Length = 754
Score = 42.7 bits (96), Expect = 4e-04
Identities = 29/64 (45%), Positives = 35/64 (54%), Gaps = 7/64 (10%)
Frame = +2
Query: 311 IKINTEKNKSISERVSIFKGDITKLE------IDAIVNAANSRLK-AGGGVDGAIHRAAG 469
+K K S R F GDIT+L+ + I NAAN RLK GGGV+ AI+ AAG
Sbjct: 332 VKEKAAKKNINSSRFFTFVGDITQLQSKGGLRCNVIANAANWRLKPGGGGVNAAIYNAAG 391
Query: 470 PFLQ 481
LQ
Sbjct: 392 EDLQ 395
>09_04_0081 -
14400293-14400397,14400953-14401036,14401144-14401214,
14401293-14401380,14401487-14401678,14401772-14402704
Length = 490
Score = 31.5 bits (68), Expect = 0.92
Identities = 20/67 (29%), Positives = 26/67 (38%), Gaps = 5/67 (7%)
Frame = -1
Query: 537 PPVTLASPVGHPPIESHSACKKGPAARCMAPSTP---PPAFSLELAAFTI--ASISSLVM 373
PP P HPP H + P AP P PP + FT A++S +M
Sbjct: 227 PPSPHRHPAAHPPPPPHHPAPRPPPPMAAAPRQPAALPPVPGATVVPFTTMQAAVSRNMM 286
Query: 372 SPLKIET 352
L + T
Sbjct: 287 ESLSVPT 293
>11_04_0168 +
14391244-14391325,14392132-14392155,14392256-14392381,
14392491-14392832,14392955-14393070,14393166-14393426,
14393875-14394072,14394177-14394254
Length = 408
Score = 30.7 bits (66), Expect = 1.6
Identities = 20/70 (28%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Frame = +2
Query: 269 SKKSTTDDLKEFEKIKINTEKNKSISERVSIFKG--DITKLEIDAIVNAANSRLKAGGGV 442
SKKS D+ + + +++ NK E ++ + G +K EI+ +N ANS++ G G
Sbjct: 61 SKKSKADETIDSTR---SSQDNKVHGEVINRWSGLYKFSKGEIEKAINYANSKICLGSGS 117
Query: 443 DGAIHRAAGP 472
G +++ P
Sbjct: 118 AGQVYQGVLP 127
>06_01_0931 + 7192519-7194075
Length = 518
Score = 30.7 bits (66), Expect = 1.6
Identities = 26/81 (32%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Frame = -1
Query: 606 SSFSADPSWGPTVWMIYLAGKL*PPVTLASPVGHPPIESHS-ACKKGPAARCMAPSTPPP 430
SSF+ADP P ++ ++G L +A PV PP ++ AC + C A + PP
Sbjct: 25 SSFTADP---PAEFLCPISGTL-----MADPVVVPPGQTFERACIQA----CAALAFSPP 72
Query: 429 AFSLELAAFTIASISSLVMSP 367
A + +L++ ++ S LV+ P
Sbjct: 73 AVAADLSSLPPSASSPLVLVP 93
>05_01_0192 + 1394342-1396645
Length = 767
Score = 30.3 bits (65), Expect = 2.1
Identities = 17/45 (37%), Positives = 25/45 (55%)
Frame = -1
Query: 501 PIESHSACKKGPAARCMAPSTPPPAFSLELAAFTIASISSLVMSP 367
P S S+ K P+ R PS+PPP + AA AS++ ++ SP
Sbjct: 247 PTSSSSSPSK-PSPRMATPSSPPPEAPVSSAAPPPASLNPMLPSP 290
>07_03_1107 - 24024387-24024497,24025799-24026410
Length = 240
Score = 29.1 bits (62), Expect = 4.9
Identities = 20/62 (32%), Positives = 28/62 (45%)
Frame = -1
Query: 528 TLASPVGHPPIESHSACKKGPAARCMAPSTPPPAFSLELAAFTIASISSLVMSPLKIETR 349
T +P PP +S A P A A +TPPPA S + A + S +P I T+
Sbjct: 79 TTPAPTKAPPTKSTKAPAPAPKA---AKATPPPASSPPVEAPVASPPSPAAEAPATIPTK 135
Query: 348 SE 343
+
Sbjct: 136 PD 137
>11_03_0035 - 9130678-9130887,9130963-9131255,9132328-9132604
Length = 259
Score = 28.7 bits (61), Expect = 6.5
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = -1
Query: 504 PPIESHSACKKGPAARCMAPSTPPPAFSLELA 409
PP + HS KG AP+ PP LEL+
Sbjct: 139 PPFKKHSIFFKGLFGTAPAPAPAPPLLELELS 170
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,016,478
Number of Sequences: 37544
Number of extensions: 437532
Number of successful extensions: 1599
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1511
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1593
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2479731924
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -