Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP24_F_P12
         (879 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73102-4|CAA97408.1|  203|Caenorhabditis elegans Hypothetical pr...   121   8e-28
AF003390-4|AAB54273.1| 1165|Caenorhabditis elegans Hypothetical ...    33   0.36 
U40935-5|AAM29686.1|  441|Caenorhabditis elegans Hypothetical pr...    32   0.47 
U40935-4|AAM29687.1|  436|Caenorhabditis elegans Hypothetical pr...    32   0.47 
Z79757-1|CAB60999.1|  299|Caenorhabditis elegans Hypothetical pr...    29   3.3  
AF026056-1|AAB81844.1|  298|Caenorhabditis elegans NK-2 class ho...    29   3.3  
Z54238-8|CAA90998.3|  459|Caenorhabditis elegans Hypothetical pr...    28   7.7  
Z50006-5|CAA90300.1|  301|Caenorhabditis elegans Hypothetical pr...    28   7.7  
U80845-1|AAK39181.1| 1217|Caenorhabditis elegans Prion-like-(q/n...    28   7.7  

>Z73102-4|CAA97408.1|  203|Caenorhabditis elegans Hypothetical
           protein B0035.3 protein.
          Length = 203

 Score =  121 bits (291), Expect = 8e-28
 Identities = 70/130 (53%), Positives = 81/130 (62%), Gaps = 8/130 (6%)
 Frame = +2

Query: 302 FEKIKINTEKNKSISERVSIFKGDITKLEIDAIVNAANSRLKAGGGVDGAIHRAAG-PFL 478
           FEK K+     K++  R+S++ GDITKL +DAIVNAANSRL  GGGVDGAIHRAAG   L
Sbjct: 13  FEKFKVA----KNVLGRISVWDGDITKLSVDAIVNAANSRLAGGGGVDGAIHRAAGRKQL 68

Query: 479 QAECDSIGGCPTGDAKVTGGYNL-PAKYIIHTVGPQ------DGSAEKLESCYEKCLSFQ 637
           Q EC    GC  GDA +T G N+   K IIHTVGPQ      D   E L +CY   L   
Sbjct: 69  QEECQQYNGCAVGDAVITSGCNINHIKKIIHTVGPQVYGNVTDERRENLVACYRTSLDIA 128

Query: 638 QEYQIKSIAF 667
            E  +KSIAF
Sbjct: 129 IENGMKSIAF 138



 Score = 49.2 bits (112), Expect = 4e-06
 Identities = 23/48 (47%), Positives = 29/48 (60%)
 Frame = +3

Query: 666 FRCISTGIYGFPNRLAAHIALRTARKFLETNTEMNRIIFCTFLPIDVE 809
           F CISTG+YG+PN  AA        ++LE N  + RI+  TFL ID E
Sbjct: 138 FCCISTGVYGYPNDDAAKTVTNFLTEYLEKNDTIERIVLVTFLDIDNE 185


>AF003390-4|AAB54273.1| 1165|Caenorhabditis elegans Hypothetical
           protein R155.3 protein.
          Length = 1165

 Score = 32.7 bits (71), Expect = 0.36
 Identities = 27/93 (29%), Positives = 50/93 (53%), Gaps = 15/93 (16%)
 Frame = +2

Query: 236 SKYLNKSQGIDSKKSTTDDLKEFEKIKINTE----KNKSIS--ERVSIFK-----GDITK 382
           + Y+N  +   +K + TD LK+FEKI +++       + IS  +++  FK     GD+ K
Sbjct: 433 TSYINSVK--KTKHAETDALKDFEKIGLHSRVIGTATRGISNMQKLVDFKDLADIGDLVK 490

Query: 383 LEIDAIVNAAN----SRLKAGGGVDGAIHRAAG 469
            E++ + +  N    + LKA  G++G +  A+G
Sbjct: 491 SEVEKVKDQLNDENVANLKALAGIEGQLKTASG 523


>U40935-5|AAM29686.1|  441|Caenorhabditis elegans Hypothetical
           protein F31E3.2a protein.
          Length = 441

 Score = 32.3 bits (70), Expect = 0.47
 Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
 Frame = +3

Query: 663 LFRCISTGIYGFPNRLAAHIALRTARKFLETNTEMN-RIIFCTFLP--IDVEITRR*CNF 833
           L   + TGIY +PN  A H A     KF++ +T +     F   +   + V IT R C+F
Sbjct: 316 LLHILLTGIYPYPNSEATHHA---NLKFIDYSTPIGCSREFANLMDRMLAVSITHRLCSF 372

Query: 834 TFLH 845
           T LH
Sbjct: 373 TVLH 376


>U40935-4|AAM29687.1|  436|Caenorhabditis elegans Hypothetical
           protein F31E3.2b protein.
          Length = 436

 Score = 32.3 bits (70), Expect = 0.47
 Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
 Frame = +3

Query: 663 LFRCISTGIYGFPNRLAAHIALRTARKFLETNTEMN-RIIFCTFLP--IDVEITRR*CNF 833
           L   + TGIY +PN  A H A     KF++ +T +     F   +   + V IT R C+F
Sbjct: 316 LLHILLTGIYPYPNSEATHHA---NLKFIDYSTPIGCSREFANLMDRMLAVSITHRLCSF 372

Query: 834 TFLH 845
           T LH
Sbjct: 373 TVLH 376


>Z79757-1|CAB60999.1|  299|Caenorhabditis elegans Hypothetical
           protein F55B12.1 protein.
          Length = 299

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +2

Query: 239 KYLNKSQGIDSKKSTTDDLKEFEKIKINTEK 331
           K  N+  GID +KS+ DD  +  K+K N  K
Sbjct: 15  KEKNEETGIDEEKSSEDDCSKRSKVKSNPSK 45


>AF026056-1|AAB81844.1|  298|Caenorhabditis elegans NK-2 class
           homeodomain protein protein.
          Length = 298

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +2

Query: 239 KYLNKSQGIDSKKSTTDDLKEFEKIKINTEK 331
           K  N+  GID +KS+ DD  +  K+K N  K
Sbjct: 15  KEKNEETGIDEEKSSEDDCSKRSKVKSNPSK 45


>Z54238-8|CAA90998.3|  459|Caenorhabditis elegans Hypothetical
           protein T28C6.7 protein.
          Length = 459

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = +1

Query: 106 VATMVNSTKWEIEKNRILKLSLEE-KRKIYKSSDFIDLENV 225
           V T+ +S  WEIE+N +L+  +   K K++K +  +D   V
Sbjct: 288 VDTLRSSRNWEIEQNALLRDQVAHLKEKVHKLTTELDASEV 328


>Z50006-5|CAA90300.1|  301|Caenorhabditis elegans Hypothetical
           protein T07C5.4 protein.
          Length = 301

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = -2

Query: 281 CFSWNQFLDFC*DIYSQGSTFSKSMKSEDL*IFLFSSNESLRIL 150
           CF W          Y +   F+K + S DL  FL +SN SL +L
Sbjct: 137 CFDWGLMSQITAIEYLKNLHFTKFLSSRDLKNFLSNSNFSLIVL 180


>U80845-1|AAK39181.1| 1217|Caenorhabditis elegans
            Prion-like-(q/n-rich)-domain-bearingprotein protein 15
            protein.
          Length = 1217

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +2

Query: 464  AGPFLQAECDSIGGCPTGDAKVTGGYNLP 550
            AGP +Q   +  GG P    KVT G N+P
Sbjct: 1126 AGPMIQQGKNIAGGYPPNQNKVTPGKNVP 1154


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,667,648
Number of Sequences: 27780
Number of extensions: 397060
Number of successful extensions: 1274
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1271
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2213393798
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)