Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP24_F_P07
(1180 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequen... 33 0.30
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 31 1.2
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 31 1.2
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 31 1.2
AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical ... 31 1.6
AL022716-5|CAB97232.1| 291|Caenorhabditis elegans Hypothetical ... 30 3.7
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 29 4.8
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 29 4.8
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 29 4.8
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 29 4.8
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 29 4.8
Z73102-2|CAB63428.1| 341|Caenorhabditis elegans Hypothetical pr... 29 6.4
Z73102-1|CAA97419.1| 298|Caenorhabditis elegans Hypothetical pr... 29 6.4
U41016-10|AAA82321.2| 1656|Caenorhabditis elegans Hypothetical p... 29 6.4
Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical pr... 29 8.4
V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein ( Caeno... 29 8.4
U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog (hed... 29 8.4
J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein ( C.ele... 29 8.4
AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen stru... 29 8.4
AL132858-2|CAB60476.2| 821|Caenorhabditis elegans Hypothetical ... 29 8.4
>U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequence
x-hybridizingprotein 1 protein.
Length = 589
Score = 33.5 bits (73), Expect = 0.30
Identities = 22/70 (31%), Positives = 24/70 (34%), Gaps = 1/70 (1%)
Frame = +2
Query: 833 PKXXPPXGXXPXXSXPPRAQXPTXXPGKXXXPPXPSPSXXTVGAF-PQNXXXXXGTPXPG 1009
P PP G P P AQ P+ P P PS G F P G P P
Sbjct: 292 PSGAPPSGGPPGPFDPSGAQ-PSGGPPGPFNPSGAPPSGGPPGPFDPSGAPPSGGPPGPF 350
Query: 1010 RQGEXPPNQG 1039
PP+ G
Sbjct: 351 NPSGAPPSGG 360
Score = 31.9 bits (69), Expect = 0.91
Identities = 21/70 (30%), Positives = 23/70 (32%), Gaps = 1/70 (1%)
Frame = +2
Query: 833 PKXXPPXGXXPXXSXPPRAQXPTXXPGKXXXPPXPSPSXXTVGAF-PQNXXXXXGTPXPG 1009
P PP G P P A P+ P P PS G F P G P P
Sbjct: 172 PSGAPPSGGPPGPFGPSGA-PPSGGPPGPFNPSEAPPSGGPTGPFDPSGAPPSGGPPGPF 230
Query: 1010 RQGEXPPNQG 1039
PP+ G
Sbjct: 231 NPSGAPPSGG 240
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 31.5 bits (68), Expect = 1.2
Identities = 19/69 (27%), Positives = 22/69 (31%), Gaps = 1/69 (1%)
Frame = +2
Query: 833 PKXXPPXGXXPXXSXPPRAQXPTXXP-GKXXXPPXPSPSXXTVGAFPQNXXXXXGTPXPG 1009
P PP G P S PP + P G PP P P G+P G
Sbjct: 298 PPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQKRQAPERSPPTGSPPTGSPPTG 357
Query: 1010 RQGEXPPNQ 1036
R P +
Sbjct: 358 RPPRGGPGK 366
Score = 30.7 bits (66), Expect = 2.1
Identities = 19/66 (28%), Positives = 20/66 (30%), Gaps = 1/66 (1%)
Frame = +2
Query: 833 PKXXPPXGXXPXXSXPPRA-QXPTXXPGKXXXPPXPSPSXXTVGAFPQNXXXXXGTPXPG 1009
PK PP PP A P G PP SP G P P P
Sbjct: 243 PKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPP 302
Query: 1010 RQGEXP 1027
+G P
Sbjct: 303 PRGSPP 308
Score = 29.1 bits (62), Expect = 6.4
Identities = 20/63 (31%), Positives = 23/63 (36%), Gaps = 1/63 (1%)
Frame = +2
Query: 845 PPXGXXPXXSXPPRAQXPTXXPGKXXXPPXP-SPSXXTVGAFPQNXXXXXGTPXPGRQGE 1021
PP G P PP+ P G PP SP G+ P G+P P G
Sbjct: 232 PPAGSPPPPP-PPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPP---PPPTGSPPPPPAGG 287
Query: 1022 XPP 1030
PP
Sbjct: 288 SPP 290
Score = 28.7 bits (61), Expect = 8.4
Identities = 13/34 (38%), Positives = 14/34 (41%)
Frame = +1
Query: 961 RLSXKPXPXXGYPXTRAXGGTPPKPRAXXAXXXP 1062
R P P G P GG+PP PRA P
Sbjct: 268 RTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPP 301
Score = 28.7 bits (61), Expect = 8.4
Identities = 18/62 (29%), Positives = 20/62 (32%)
Frame = +2
Query: 845 PPXGXXPXXSXPPRAQXPTXXPGKXXXPPXPSPSXXTVGAFPQNXXXXXGTPXPGRQGEX 1024
PP G P PP P PP P G+ P G+P P G
Sbjct: 275 PPTGSPPP---PPAGGSPPPPRAGSPPPPPPPRGSPPTGSLP--PPQAGGSPPPAGTGSP 329
Query: 1025 PP 1030
PP
Sbjct: 330 PP 331
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 31.5 bits (68), Expect = 1.2
Identities = 19/69 (27%), Positives = 22/69 (31%), Gaps = 1/69 (1%)
Frame = +2
Query: 833 PKXXPPXGXXPXXSXPPRAQXPTXXP-GKXXXPPXPSPSXXTVGAFPQNXXXXXGTPXPG 1009
P PP G P S PP + P G PP P P G+P G
Sbjct: 319 PPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQKRQAPERSPPTGSPPTGSPPTG 378
Query: 1010 RQGEXPPNQ 1036
R P +
Sbjct: 379 RPPRGGPGK 387
Score = 30.7 bits (66), Expect = 2.1
Identities = 19/66 (28%), Positives = 20/66 (30%), Gaps = 1/66 (1%)
Frame = +2
Query: 833 PKXXPPXGXXPXXSXPPRA-QXPTXXPGKXXXPPXPSPSXXTVGAFPQNXXXXXGTPXPG 1009
PK PP PP A P G PP SP G P P P
Sbjct: 264 PKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPP 323
Query: 1010 RQGEXP 1027
+G P
Sbjct: 324 PRGSPP 329
Score = 29.1 bits (62), Expect = 6.4
Identities = 20/63 (31%), Positives = 23/63 (36%), Gaps = 1/63 (1%)
Frame = +2
Query: 845 PPXGXXPXXSXPPRAQXPTXXPGKXXXPPXP-SPSXXTVGAFPQNXXXXXGTPXPGRQGE 1021
PP G P PP+ P G PP SP G+ P G+P P G
Sbjct: 253 PPAGSPPPPP-PPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPP---PPPTGSPPPPPAGG 308
Query: 1022 XPP 1030
PP
Sbjct: 309 SPP 311
Score = 28.7 bits (61), Expect = 8.4
Identities = 13/34 (38%), Positives = 14/34 (41%)
Frame = +1
Query: 961 RLSXKPXPXXGYPXTRAXGGTPPKPRAXXAXXXP 1062
R P P G P GG+PP PRA P
Sbjct: 289 RTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPP 322
Score = 28.7 bits (61), Expect = 8.4
Identities = 18/62 (29%), Positives = 20/62 (32%)
Frame = +2
Query: 845 PPXGXXPXXSXPPRAQXPTXXPGKXXXPPXPSPSXXTVGAFPQNXXXXXGTPXPGRQGEX 1024
PP G P PP P PP P G+ P G+P P G
Sbjct: 296 PPTGSPPP---PPAGGSPPPPRAGSPPPPPPPRGSPPTGSLP--PPQAGGSPPPAGTGSP 350
Query: 1025 PP 1030
PP
Sbjct: 351 PP 352
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 31.5 bits (68), Expect = 1.2
Identities = 19/69 (27%), Positives = 22/69 (31%), Gaps = 1/69 (1%)
Frame = +2
Query: 833 PKXXPPXGXXPXXSXPPRAQXPTXXP-GKXXXPPXPSPSXXTVGAFPQNXXXXXGTPXPG 1009
P PP G P S PP + P G PP P P G+P G
Sbjct: 304 PPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQKRQAPERSPPTGSPPTGSPPTG 363
Query: 1010 RQGEXPPNQ 1036
R P +
Sbjct: 364 RPPRGGPGK 372
Score = 30.7 bits (66), Expect = 2.1
Identities = 19/66 (28%), Positives = 20/66 (30%), Gaps = 1/66 (1%)
Frame = +2
Query: 833 PKXXPPXGXXPXXSXPPRA-QXPTXXPGKXXXPPXPSPSXXTVGAFPQNXXXXXGTPXPG 1009
PK PP PP A P G PP SP G P P P
Sbjct: 249 PKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPP 308
Query: 1010 RQGEXP 1027
+G P
Sbjct: 309 PRGSPP 314
Score = 29.1 bits (62), Expect = 6.4
Identities = 20/63 (31%), Positives = 23/63 (36%), Gaps = 1/63 (1%)
Frame = +2
Query: 845 PPXGXXPXXSXPPRAQXPTXXPGKXXXPPXP-SPSXXTVGAFPQNXXXXXGTPXPGRQGE 1021
PP G P PP+ P G PP SP G+ P G+P P G
Sbjct: 238 PPAGSPPPPP-PPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPP---PPPTGSPPPPPAGG 293
Query: 1022 XPP 1030
PP
Sbjct: 294 SPP 296
Score = 28.7 bits (61), Expect = 8.4
Identities = 13/34 (38%), Positives = 14/34 (41%)
Frame = +1
Query: 961 RLSXKPXPXXGYPXTRAXGGTPPKPRAXXAXXXP 1062
R P P G P GG+PP PRA P
Sbjct: 274 RTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPP 307
Score = 28.7 bits (61), Expect = 8.4
Identities = 18/62 (29%), Positives = 20/62 (32%)
Frame = +2
Query: 845 PPXGXXPXXSXPPRAQXPTXXPGKXXXPPXPSPSXXTVGAFPQNXXXXXGTPXPGRQGEX 1024
PP G P PP P PP P G+ P G+P P G
Sbjct: 281 PPTGSPPP---PPAGGSPPPPRAGSPPPPPPPRGSPPTGSLP--PPQAGGSPPPAGTGSP 335
Query: 1025 PP 1030
PP
Sbjct: 336 PP 337
>AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical
protein Y63D3A.5 protein.
Length = 486
Score = 31.1 bits (67), Expect = 1.6
Identities = 23/78 (29%), Positives = 24/78 (30%), Gaps = 1/78 (1%)
Frame = +2
Query: 833 PKXXPPXGXXPXXSXPPRAQXPTXXPGKXXXPPXPSPSXXTVGAFPQNXXXXXGTPXPGR 1012
P+ PP P S Q P PG PP P PQ G P PG
Sbjct: 382 PQSGPPGAFAPPPSAFGAPQGP-GGPGGYGPPPPGGPGAPGSYGPPQGGPGGFGPPPPGG 440
Query: 1013 QGE-XPPNQGXXXXXTXP 1063
G PP G P
Sbjct: 441 PGAYGPPPTGFPPVGAPP 458
>AL022716-5|CAB97232.1| 291|Caenorhabditis elegans Hypothetical
protein C24F3.6 protein.
Length = 291
Score = 29.9 bits (64), Expect = 3.7
Identities = 15/48 (31%), Positives = 16/48 (33%)
Frame = +2
Query: 878 PPRAQXPTXXPGKXXXPPXPSPSXXTVGAFPQNXXXXXGTPXPGRQGE 1021
PP + P PG P P A P G P PG GE
Sbjct: 165 PPGPEGPNGEPGNKGPAGPPGPGGKPGPAGPPGENGNNGEPQPGAPGE 212
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical protein
C08B11.5 protein.
Length = 388
Score = 29.5 bits (63), Expect = 4.8
Identities = 19/73 (26%), Positives = 22/73 (30%), Gaps = 5/73 (6%)
Frame = +2
Query: 833 PKXXPPXGXXPXXSXPPRAQXPTXX-----PGKXXXPPXPSPSXXTVGAFPQNXXXXXGT 997
P PP G P P P PG PP P P G P +
Sbjct: 298 PPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYPS 357
Query: 998 PXPGRQGEXPPNQ 1036
PG PP++
Sbjct: 358 AGPGMYPPPPPSR 370
Score = 28.7 bits (61), Expect = 8.4
Identities = 14/38 (36%), Positives = 15/38 (39%)
Frame = +2
Query: 833 PKXXPPXGXXPXXSXPPRAQXPTXXPGKXXXPPXPSPS 946
P P G P PP + P PG PP P PS
Sbjct: 287 PPPPPSSGMWPPPPPPPPGRTP-GPPGMPGMPPPPPPS 323
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 29.5 bits (63), Expect = 4.8
Identities = 19/62 (30%), Positives = 20/62 (32%)
Frame = +2
Query: 845 PPXGXXPXXSXPPRAQXPTXXPGKXXXPPXPSPSXXTVGAFPQNXXXXXGTPXPGRQGEX 1024
PP G P PP P P PP P P G P + P PG
Sbjct: 715 PPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPG---GLPPISGGPPPPPPPPGGCPPP 771
Query: 1025 PP 1030
PP
Sbjct: 772 PP 773
Score = 29.5 bits (63), Expect = 4.8
Identities = 16/46 (34%), Positives = 16/46 (34%)
Frame = +2
Query: 833 PKXXPPXGXXPXXSXPPRAQXPTXXPGKXXXPPXPSPSXXTVGAFP 970
P PP G P PP P PG PP P P G P
Sbjct: 743 PPPPPPGGLPPISGGPP---PPPPPPGGCPPPPPPPPPGGFKGGPP 785
Score = 29.1 bits (62), Expect = 6.4
Identities = 13/37 (35%), Positives = 13/37 (35%)
Frame = +2
Query: 833 PKXXPPXGXXPXXSXPPRAQXPTXXPGKXXXPPXPSP 943
P PP G P PP P P PP P P
Sbjct: 727 PPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPP 763
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 29.5 bits (63), Expect = 4.8
Identities = 19/62 (30%), Positives = 20/62 (32%)
Frame = +2
Query: 845 PPXGXXPXXSXPPRAQXPTXXPGKXXXPPXPSPSXXTVGAFPQNXXXXXGTPXPGRQGEX 1024
PP G P PP P P PP P P G P + P PG
Sbjct: 715 PPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPG---GLPPISGGPPPPPPPPGGCPPP 771
Query: 1025 PP 1030
PP
Sbjct: 772 PP 773
Score = 29.5 bits (63), Expect = 4.8
Identities = 16/46 (34%), Positives = 16/46 (34%)
Frame = +2
Query: 833 PKXXPPXGXXPXXSXPPRAQXPTXXPGKXXXPPXPSPSXXTVGAFP 970
P PP G P PP P PG PP P P G P
Sbjct: 743 PPPPPPGGLPPISGGPP---PPPPPPGGCPPPPPPPPPGGFKGGPP 785
Score = 29.1 bits (62), Expect = 6.4
Identities = 13/37 (35%), Positives = 13/37 (35%)
Frame = +2
Query: 833 PKXXPPXGXXPXXSXPPRAQXPTXXPGKXXXPPXPSP 943
P PP G P PP P P PP P P
Sbjct: 727 PPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPP 763
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA binding
protein protein.
Length = 398
Score = 29.5 bits (63), Expect = 4.8
Identities = 19/73 (26%), Positives = 22/73 (30%), Gaps = 5/73 (6%)
Frame = +2
Query: 833 PKXXPPXGXXPXXSXPPRAQXPTXX-----PGKXXXPPXPSPSXXTVGAFPQNXXXXXGT 997
P PP G P P P PG PP P P G P +
Sbjct: 308 PPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYPS 367
Query: 998 PXPGRQGEXPPNQ 1036
PG PP++
Sbjct: 368 AGPGMYPPPPPSR 380
Score = 28.7 bits (61), Expect = 8.4
Identities = 14/38 (36%), Positives = 15/38 (39%)
Frame = +2
Query: 833 PKXXPPXGXXPXXSXPPRAQXPTXXPGKXXXPPXPSPS 946
P P G P PP + P PG PP P PS
Sbjct: 297 PPPPPSSGMWPPPPPPPPGRTP-GPPGMPGMPPPPPPS 333
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 29.5 bits (63), Expect = 4.8
Identities = 19/62 (30%), Positives = 20/62 (32%)
Frame = +2
Query: 845 PPXGXXPXXSXPPRAQXPTXXPGKXXXPPXPSPSXXTVGAFPQNXXXXXGTPXPGRQGEX 1024
PP G P PP P P PP P P G P + P PG
Sbjct: 298 PPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPG---GLPPISGGPPPPPPPPGGCPPP 354
Query: 1025 PP 1030
PP
Sbjct: 355 PP 356
Score = 29.5 bits (63), Expect = 4.8
Identities = 16/46 (34%), Positives = 16/46 (34%)
Frame = +2
Query: 833 PKXXPPXGXXPXXSXPPRAQXPTXXPGKXXXPPXPSPSXXTVGAFP 970
P PP G P PP P PG PP P P G P
Sbjct: 326 PPPPPPGGLPPISGGPP---PPPPPPGGCPPPPPPPPPGGFKGGPP 368
Score = 29.1 bits (62), Expect = 6.4
Identities = 13/37 (35%), Positives = 13/37 (35%)
Frame = +2
Query: 833 PKXXPPXGXXPXXSXPPRAQXPTXXPGKXXXPPXPSP 943
P PP G P PP P P PP P P
Sbjct: 310 PPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPP 346
>Z73102-2|CAB63428.1| 341|Caenorhabditis elegans Hypothetical protein
B0035.1b protein.
Length = 341
Score = 29.1 bits (62), Expect = 6.4
Identities = 18/55 (32%), Positives = 18/55 (32%)
Frame = +2
Query: 845 PPXGXXPXXSXPPRAQXPTXXPGKXXXPPXPSPSXXTVGAFPQNXXXXXGTPXPG 1009
PP G P PPR P PG PP P P G P PG
Sbjct: 151 PPRGM-PGAYPPPRGYPPAPAPG-VYMPPPGMPGAYPPPRMPIGHGPPGGPPMPG 203
>Z73102-1|CAA97419.1| 298|Caenorhabditis elegans Hypothetical protein
B0035.1a protein.
Length = 298
Score = 29.1 bits (62), Expect = 6.4
Identities = 18/55 (32%), Positives = 18/55 (32%)
Frame = +2
Query: 845 PPXGXXPXXSXPPRAQXPTXXPGKXXXPPXPSPSXXTVGAFPQNXXXXXGTPXPG 1009
PP G P PPR P PG PP P P G P PG
Sbjct: 151 PPRGM-PGAYPPPRGYPPAPAPG-VYMPPPGMPGAYPPPRMPIGHGPPGGPPMPG 203
>U41016-10|AAA82321.2| 1656|Caenorhabditis elegans Hypothetical
protein R11G1.1 protein.
Length = 1656
Score = 29.1 bits (62), Expect = 6.4
Identities = 18/56 (32%), Positives = 20/56 (35%)
Frame = +2
Query: 863 PXXSXPPRAQXPTXXPGKXXXPPXPSPSXXTVGAFPQNXXXXXGTPXPGRQGEXPP 1030
P S Q P PG+ PP +PS P TP P QG PP
Sbjct: 293 PSISQTQFPQAPLIFPGRPDLPPITAPSPLNNWPIP----IVTTTPDPHHQGPLPP 344
>Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical protein
W01B6.7 protein.
Length = 301
Score = 28.7 bits (61), Expect = 8.4
Identities = 20/68 (29%), Positives = 22/68 (32%), Gaps = 4/68 (5%)
Frame = +2
Query: 827 TXPKXXPPXGXXPXXSXP---PRAQXPTXXPGKXXXPPXPSPSXXTVGAFPQNXXXXXGT 997
T P P G P + P P P PG P P P+ A P G
Sbjct: 143 TQPPCQPCPGGPPGPAGPAGPPGPPGPDGNPGSPAGPSGPGPAGPPGPAGPAGNDGAPGA 202
Query: 998 P-XPGRQG 1018
P PG G
Sbjct: 203 PGGPGEPG 210
>V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-2 coding for a collagen.
).
Length = 301
Score = 28.7 bits (61), Expect = 8.4
Identities = 20/68 (29%), Positives = 22/68 (32%), Gaps = 4/68 (5%)
Frame = +2
Query: 827 TXPKXXPPXGXXPXXSXP---PRAQXPTXXPGKXXXPPXPSPSXXTVGAFPQNXXXXXGT 997
T P P G P + P P P PG P P P+ A P G
Sbjct: 143 TQPPCQPCPGGPPGPAGPAGPPGPPGPDGNPGSPAGPSGPGPAGPPGPAGPAGNDGAPGA 202
Query: 998 P-XPGRQG 1018
P PG G
Sbjct: 203 PGGPGEPG 210
>U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog
(hedgehog-like family)protein 7 protein.
Length = 401
Score = 28.7 bits (61), Expect = 8.4
Identities = 17/66 (25%), Positives = 19/66 (28%)
Frame = +2
Query: 833 PKXXPPXGXXPXXSXPPRAQXPTXXPGKXXXPPXPSPSXXTVGAFPQNXXXXXGTPXPGR 1012
P PP P + P A P P P P P+ A P P P
Sbjct: 78 PAPAPPLASYPQNAVPVPAPPPAPYPQHAVPAPAPPPAPYPQHAVPAPAPYQQQPPPPPP 137
Query: 1013 QGEXPP 1030
PP
Sbjct: 138 PPHYPP 143
>J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein ( C.elegans
(nematode)collagen 2 (col-2) gene, complete cds. ).
Length = 301
Score = 28.7 bits (61), Expect = 8.4
Identities = 20/68 (29%), Positives = 22/68 (32%), Gaps = 4/68 (5%)
Frame = +2
Query: 827 TXPKXXPPXGXXPXXSXP---PRAQXPTXXPGKXXXPPXPSPSXXTVGAFPQNXXXXXGT 997
T P P G P + P P P PG P P P+ A P G
Sbjct: 143 TQPPCQPCPGGPPGPAGPAGPPGPPGPDGNPGSPAGPSGPGPAGPPGPAGPAGNDGAPGA 202
Query: 998 P-XPGRQG 1018
P PG G
Sbjct: 203 PGGPGEPG 210
>AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen
structural gene, probabledorsal and ventral cuticle
component, from embryo to adult,but maximal in dauer
(28.0 kD) (col-2) protein.
Length = 301
Score = 28.7 bits (61), Expect = 8.4
Identities = 20/68 (29%), Positives = 22/68 (32%), Gaps = 4/68 (5%)
Frame = +2
Query: 827 TXPKXXPPXGXXPXXSXP---PRAQXPTXXPGKXXXPPXPSPSXXTVGAFPQNXXXXXGT 997
T P P G P + P P P PG P P P+ A P G
Sbjct: 143 TQPPCQPCPGGPPGPAGPAGPPGPPGPDGNPGSPAGPSGPGPAGPPGPAGPAGNDGAPGA 202
Query: 998 P-XPGRQG 1018
P PG G
Sbjct: 203 PGGPGEPG 210
>AL132858-2|CAB60476.2| 821|Caenorhabditis elegans Hypothetical
protein Y113G7A.3 protein.
Length = 821
Score = 28.7 bits (61), Expect = 8.4
Identities = 15/46 (32%), Positives = 16/46 (34%)
Frame = +1
Query: 928 APXXPIXXNRGRLSXKPXPXXGYPXTRAXGGTPPKPRAXXAXXXPG 1065
AP P+ G P G P GG PP P A PG
Sbjct: 228 APGAPMAMGSGAAPLGQLPGSGLPGGLPRGGGPPLPGAAQGIVAPG 273
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,152,005
Number of Sequences: 27780
Number of extensions: 210194
Number of successful extensions: 546
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 335
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 505
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3224247522
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -