Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP24_F_P06
         (883 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC821.10c |sod1||superoxide dismutase Sod1|Schizosaccharomyces...   120   4e-28
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    31   0.16 
SPAC823.07 |||GPI-phospholipase A2 activity regulator |Schizosac...    27   3.5  
SPAC1B3.20 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    27   4.7  
SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomy...    27   4.7  
SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|ch...    26   8.2  
SPAC18G6.04c |shm2||serine hydroxymethyltransferase Shm2 |Schizo...    26   8.2  
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb...    26   8.2  

>SPAC821.10c |sod1||superoxide dismutase Sod1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 154

 Score =  120 bits (288), Expect = 4e-28
 Identities = 57/108 (52%), Positives = 66/108 (61%)
 Frame = +1

Query: 271 GFHVHEKGDLSGGCLSTGSHFNPEHKDHGHPNDVNRHVGDLGNVVFDENHYSRIDLVDDQ 450
           GFH+H+ GD + GC S G HFNPE K HG      RHVGDLGN+  D     +    D  
Sbjct: 45  GFHIHQFGDNTNGCTSAGPHFNPEGKTHGDRTAAVRHVGDLGNLESDAQGNIKTTFSDSV 104

Query: 451 ISLSGPHGIIGRAVVLHQKADDYGKSDHPDSRKTGNAGGRVACGVIGI 594
           ISL G + IIGR +V+H   DD GK    +S KTGNAG R ACGVIGI
Sbjct: 105 ISLFGANSIIGRTIVIHAGEDDLGKGTSEESLKTGNAGARNACGVIGI 152


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 31.5 bits (68), Expect = 0.16
 Identities = 17/40 (42%), Positives = 19/40 (47%)
 Frame = +1

Query: 364  NDVNRHVGDLGNVVFDENHYSRIDLVDDQISLSGPHGIIG 483
            ND   H GDLG ++ D N        DDQI L G    IG
Sbjct: 3092 NDRIYHTGDLGRLLKDNNSLEFCGRTDDQIKLRGQRIEIG 3131


>SPAC823.07 |||GPI-phospholipase A2 activity regulator
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 331

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +1

Query: 562 GGRVACGVIGIL*IYKFLI*LSYLIKY 642
           GG++ C +IG++ I  F+  +SYL  Y
Sbjct: 197 GGKLLCWIIGVIFIAAFIAHVSYLSFY 223


>SPAC1B3.20 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 78

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = -3

Query: 308 PPLRSP--FSWTWKPYSPGGSPVMPTLNVNLPI 216
           PPLR P  F    +P+S GG+  +  LN+  P+
Sbjct: 37  PPLRGPAGFPVNPRPFSHGGNANLDRLNLKEPV 69


>SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 543

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -3

Query: 293 PFSWTWKPYSPGGSPVMPTLNVNL 222
           P SW ++  +PGG P+   L VNL
Sbjct: 371 PGSWIFRKLTPGGIPLNAILLVNL 394


>SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 778

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +2

Query: 527 VTIRTPGRPATLAVESLAVSSEFYRSTNFSFN 622
           +T   PG+P TL V     S+E+    N +FN
Sbjct: 724 LTTFAPGKPLTLVVHPADGSAEWSTKLNHTFN 755


>SPAC18G6.04c |shm2||serine hydroxymethyltransferase Shm2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 472

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = +3

Query: 132 HGFTTPSRAIAVLST 176
           HGF+TP +AI+ +ST
Sbjct: 143 HGFSTPQKAISAVST 157


>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +1

Query: 379 HVGDLGNVVFDENHYSRIDLVDDQI 453
           HV + GNV FD    S + L+D ++
Sbjct: 102 HVNEDGNVAFDSEFDSNLKLLDSEL 126


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,669,231
Number of Sequences: 5004
Number of extensions: 51732
Number of successful extensions: 122
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)