Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP24_F_P06
(883 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_1006 + 13150394-13150450,13150787-13150899,13152538-131527... 158 6e-39
07_03_1599 - 28022196-28022218,28022355-28022408,28022545-280226... 154 1e-37
08_02_1596 + 28125331-28125556,28125986-28126047,28126160-281261... 153 2e-37
03_02_0185 - 6239421-6239480,6239971-6240024,6240523-6240578,624... 125 5e-29
04_04_0863 + 28847761-28848009,28848108-28848131,28849388-288494... 45 9e-05
03_06_0167 - 32115770-32115886,32116388-32117102,32117178-321173... 35 0.099
11_04_0091 - 13392864-13392950,13393534-13393579,13393706-133938... 29 4.9
04_04_1273 - 32307273-32307569,32307659-32307791,32307874-323081... 29 4.9
12_02_1170 - 26663491-26663602,26663999-26664104,26664613-266648... 29 6.5
04_04_0464 - 25405629-25405665,25406644-25406710,25408112-254083... 29 6.5
12_02_0529 - 20067974-20068588,20069982-20070048,20070156-200702... 28 8.6
>03_02_1006 +
13150394-13150450,13150787-13150899,13152538-13152709,
13153791-13153878,13153971-13154072,13154197-13154292,
13154547-13154578,13154727-13154802,13155264-13155317,
13155431-13155453
Length = 270
Score = 158 bits (383), Expect = 6e-39
Identities = 71/137 (51%), Positives = 92/137 (67%)
Frame = +1
Query: 184 LEATSHSLRFKMGRFTFRVGITGLPPGEYGFHVHEKGDLSGGCLSTGSHFNPEHKDHGHP 363
++ T H ++ G T ++GL PG +GFH+H GD + GC+STG H+NP K+HG P
Sbjct: 132 VKGTIHFVQEGDGPTTVTGSVSGLKPGLHGFHIHALGDTTNGCMSTGPHYNPAGKEHGAP 191
Query: 364 NDVNRHVGDLGNVVFDENHYSRIDLVDDQISLSGPHGIIGRAVVLHQKADDYGKSDHPDS 543
D RH GDLGNV E+ + I +VD QI L+GP+ IIGRAVV+H DD GK H S
Sbjct: 192 EDETRHAGDLGNVTAGEDGVANIHVVDSQIPLTGPNSIIGRAVVVHADPDDLGKGGHELS 251
Query: 544 RKTGNAGGRVACGVIGI 594
+ TGNAGGRVACG+IG+
Sbjct: 252 KTTGNAGGRVACGIIGL 268
>07_03_1599 -
28022196-28022218,28022355-28022408,28022545-28022620,
28022727-28022758,28022921-28023016,28023105-28023206,
28023291-28023366
Length = 152
Score = 154 bits (373), Expect = 1e-37
Identities = 66/117 (56%), Positives = 83/117 (70%)
Frame = +1
Query: 244 ITGLPPGEYGFHVHEKGDLSGGCLSTGSHFNPEHKDHGHPNDVNRHVGDLGNVVFDENHY 423
++GL PG +GFHVH GD + GC+STG HFNP K+HG P D NRH GDLGN+ +
Sbjct: 34 VSGLKPGLHGFHVHALGDTTNGCMSTGPHFNPTGKEHGAPQDENRHAGDLGNITAGADGV 93
Query: 424 SRIDLVDDQISLSGPHGIIGRAVVLHQKADDYGKSDHPDSRKTGNAGGRVACGVIGI 594
+ +++ D QI L+G H IIGRAVV+H DD GK H S+ TGNAGGRVACG+IG+
Sbjct: 94 ANVNVSDSQIPLTGAHSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 150
>08_02_1596 +
28125331-28125556,28125986-28126047,28126160-28126199,
28126934-28127029,28127138-28127169,28127274-28127349,
28127430-28127483,28127916-28127941
Length = 203
Score = 153 bits (370), Expect = 2e-37
Identities = 67/125 (53%), Positives = 85/125 (68%)
Frame = +1
Query: 220 GRFTFRVGITGLPPGEYGFHVHEKGDLSGGCLSTGSHFNPEHKDHGHPNDVNRHVGDLGN 399
G T V +TGL PG +GFH+HE GD + GC+STG HFNP + HG P D RH GDLGN
Sbjct: 76 GPTTVNVRVTGLTPGLHGFHLHEFGDTTNGCISTGPHFNPNNLTHGAPEDEVRHAGDLGN 135
Query: 400 VVFDENHYSRIDLVDDQISLSGPHGIIGRAVVLHQKADDYGKSDHPDSRKTGNAGGRVAC 579
+V + + +VD QI LSGP+ ++GRA V+H+ DD GK H S TGNAGGR+AC
Sbjct: 136 IVANAEGVAEATIVDKQIPLSGPNSVVGRAFVVHELEDDLGKGGHELSLSTGNAGGRLAC 195
Query: 580 GVIGI 594
GV+G+
Sbjct: 196 GVVGL 200
>03_02_0185 -
6239421-6239480,6239971-6240024,6240523-6240578,
6241108-6241183,6241276-6241307,6241421-6241516,
6242498-6242599,6242728-6242833
Length = 193
Score = 125 bits (301), Expect = 5e-29
Identities = 54/94 (57%), Positives = 70/94 (74%)
Frame = +1
Query: 244 ITGLPPGEYGFHVHEKGDLSGGCLSTGSHFNPEHKDHGHPNDVNRHVGDLGNVVFDENHY 423
+TGL PG +GFH+H GD + GC STG HFNP +K HG P+D RHVGDLGN+V +++
Sbjct: 44 VTGLAPGLHGFHIHSFGDTTNGCNSTGPHFNPHNKSHGAPSDDERHVGDLGNIVANKDGV 103
Query: 424 SRIDLVDDQISLSGPHGIIGRAVVLHQKADDYGK 525
+ I + D QISLSGPH I+GRAVV+H +DD G+
Sbjct: 104 ADIFIKDLQISLSGPHSILGRAVVVHADSDDLGR 137
>04_04_0863 +
28847761-28848009,28848108-28848131,28849388-28849460,
28849550-28849684,28850191-28850411,28851747-28851983
Length = 312
Score = 44.8 bits (101), Expect = 9e-05
Identities = 27/89 (30%), Positives = 49/89 (55%)
Frame = +1
Query: 247 TGLPPGEYGFHVHEKGDLSGGCLSTGSHFNPEHKDHGHPNDVNRHVGDLGNVVFDENHYS 426
+GL PG++G+ ++E GDL+ G STG +NP D+ N+ +GDLG + E +
Sbjct: 197 SGLSPGKHGWSINEFGDLTRGAESTGKVYNP--SDYRS----NKPLGDLGTLEAGEKGEA 250
Query: 427 RIDLVDDQISLSGPHGIIGRAVVLHQKAD 513
+ +++ + +IGR++ L+ D
Sbjct: 251 QFSASKEKLKVV---DLIGRSIALYATED 276
>03_06_0167 -
32115770-32115886,32116388-32117102,32117178-32117383,
32118094-32118138,32119047-32119109,32119726-32119749,
32120673-32120772,32120814-32120907,32121036-32121074,
32121605-32121668
Length = 488
Score = 34.7 bits (76), Expect = 0.099
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +1
Query: 229 TFRVGITGLPPGEYGFHVHEKGDLSGGCLSTG 324
T + ++GL P +GFHVH G + GC+ G
Sbjct: 38 TVKENVSGLKPVLHGFHVHALGGTTNGCMRNG 69
>11_04_0091 -
13392864-13392950,13393534-13393579,13393706-13393819,
13394135-13394256,13394360-13394431,13395663-13395812,
13399258-13399341,13399459-13399560,13399634-13399671,
13399762-13399864,13399978-13400389,13400493-13400671
Length = 502
Score = 29.1 bits (62), Expect = 4.9
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -1
Query: 532 GHSCRNHQLSGGAPPLCR*CRADPI 458
G + +H+ GAPPL R C A P+
Sbjct: 109 GENLNHHRSPAGAPPLTRLCAAGPV 133
>04_04_1273 -
32307273-32307569,32307659-32307791,32307874-32308105,
32308220-32308436,32308594-32308718,32309416-32310757
Length = 781
Score = 29.1 bits (62), Expect = 4.9
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -2
Query: 177 LWIERQWRGTAW*SHDEPSP 118
LW ++W TAW S D+PSP
Sbjct: 173 LWSGQEWFITAWRSADDPSP 192
>12_02_1170 -
26663491-26663602,26663999-26664104,26664613-26664816,
26664914-26665076,26665196-26665317,26665702-26665969
Length = 324
Score = 28.7 bits (61), Expect = 6.5
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = +2
Query: 62 SQRENKNAASTHXPGCDRSGDGSSWLHHAVPRHCR 166
S+ KN A+ G D G SWL +PR R
Sbjct: 249 SRHSVKNGAADQLTGVDEEGHRLSWLTETIPRMLR 283
>04_04_0464 -
25405629-25405665,25406644-25406710,25408112-25408373,
25408989-25409198,25409818-25410006,25410087-25410548,
25410889-25410936,25411972-25412301
Length = 534
Score = 28.7 bits (61), Expect = 6.5
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
Frame = -1
Query: 577 KRLD-RQRCRSSWSPDGH-SCRNHQLSGGAP 491
KR+D RQRC+ S+SP SC + +L AP
Sbjct: 453 KRMDDRQRCQCSFSPVARPSCGHDELQAAAP 483
>12_02_0529 -
20067974-20068588,20069982-20070048,20070156-20070264,
20070357-20070402,20070501-20070636,20070745-20070866,
20070944-20071306,20071914-20072043,20072129-20072202,
20072620-20072709,20072836-20072875,20073047-20073117,
20074248-20074277
Length = 630
Score = 28.3 bits (60), Expect = 8.6
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = -1
Query: 508 LSGGAPPLCR*CRADPIARSGRLPGRSCCSGSRQR 404
LSGGAP R + P AR G+ G G+R+R
Sbjct: 411 LSGGAPGRTRGLKISPRARRGQARGAERGGGARRR 445
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,836,638
Number of Sequences: 37544
Number of extensions: 442393
Number of successful extensions: 1284
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1246
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1284
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2491484208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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