Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP24_F_P06
(883 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB190513-1|BAD51397.1| 221|Caenorhabditis elegans superoxide di... 143 1e-34
Z27080-4|CAB61015.1| 176|Caenorhabditis elegans Hypothetical pr... 141 5e-34
AB003924-1|BAA28262.1| 176|Caenorhabditis elegans SOD4-1 protein. 141 5e-34
X77020-1|CAA54318.1| 158|Caenorhabditis elegans copper/zinc sup... 127 1e-29
L20135-1|AAA28147.1| 158|Caenorhabditis elegans superoxide dism... 127 1e-29
AC006608-8|AAV34795.1| 158|Caenorhabditis elegans Sod (superoxi... 127 1e-29
AC006608-7|AAF39759.1| 180|Caenorhabditis elegans Sod (superoxi... 127 1e-29
U42833-3|AAA83577.1| 178|Caenorhabditis elegans Sod (superoxide... 117 1e-26
AF022985-11|AAB69967.2| 650|Caenorhabditis elegans Hypothetical... 28 7.7
>AB190513-1|BAD51397.1| 221|Caenorhabditis elegans superoxide
dismutase protein.
Length = 221
Score = 143 bits (347), Expect = 1e-34
Identities = 61/118 (51%), Positives = 81/118 (68%)
Frame = +1
Query: 244 ITGLPPGEYGFHVHEKGDLSGGCLSTGSHFNPEHKDHGHPNDVNRHVGDLGNVVFDENHY 423
++GL G++GFH+HEKGD GCLS G H+NP HG P+D NRH+GDLGN+ +
Sbjct: 59 VSGLAAGKHGFHIHEKGDTGNGCLSAGGHYNPHKLSHGAPDDSNRHIGDLGNIESPASGD 118
Query: 424 SRIDLVDDQISLSGPHGIIGRAVVLHQKADDYGKSDHPDSRKTGNAGGRVACGVIGIL 597
+ I + D SLSG + IIGR+VV+H+K DD G+ S+ TGNAG R+ACG IGI+
Sbjct: 119 TLISVSDSLASLSGQYSIIGRSVVIHEKTDDLGRGTSDQSKTTGNAGSRLACGTIGIV 176
>Z27080-4|CAB61015.1| 176|Caenorhabditis elegans Hypothetical
protein F55H2.1 protein.
Length = 176
Score = 141 bits (342), Expect = 5e-34
Identities = 60/116 (51%), Positives = 79/116 (68%)
Frame = +1
Query: 244 ITGLPPGEYGFHVHEKGDLSGGCLSTGSHFNPEHKDHGHPNDVNRHVGDLGNVVFDENHY 423
++GL G++GFH+HEKGD GCLS G H+NP HG P+D NRH+GDLGN+ +
Sbjct: 59 VSGLAAGKHGFHIHEKGDTGNGCLSAGGHYNPHKLSHGAPDDSNRHIGDLGNIESPASGD 118
Query: 424 SRIDLVDDQISLSGPHGIIGRAVVLHQKADDYGKSDHPDSRKTGNAGGRVACGVIG 591
+ I + D SLSG + IIGR+VV+H+K DD G+ S+ TGNAG R+ACG IG
Sbjct: 119 TLISVSDSLASLSGQYSIIGRSVVIHEKTDDLGRGTSDQSKTTGNAGSRLACGTIG 174
>AB003924-1|BAA28262.1| 176|Caenorhabditis elegans SOD4-1 protein.
Length = 176
Score = 141 bits (342), Expect = 5e-34
Identities = 60/116 (51%), Positives = 79/116 (68%)
Frame = +1
Query: 244 ITGLPPGEYGFHVHEKGDLSGGCLSTGSHFNPEHKDHGHPNDVNRHVGDLGNVVFDENHY 423
++GL G++GFH+HEKGD GCLS G H+NP HG P+D NRH+GDLGN+ +
Sbjct: 59 VSGLAAGKHGFHIHEKGDTGNGCLSAGGHYNPHKLSHGAPDDSNRHIGDLGNIESPASGD 118
Query: 424 SRIDLVDDQISLSGPHGIIGRAVVLHQKADDYGKSDHPDSRKTGNAGGRVACGVIG 591
+ I + D SLSG + IIGR+VV+H+K DD G+ S+ TGNAG R+ACG IG
Sbjct: 119 TLISVSDSLASLSGQYSIIGRSVVIHEKTDDLGRGTSDQSKTTGNAGSRLACGTIG 174
>X77020-1|CAA54318.1| 158|Caenorhabditis elegans copper/zinc
superoxide dismutase protein.
Length = 158
Score = 127 bits (306), Expect = 1e-29
Identities = 59/120 (49%), Positives = 78/120 (65%), Gaps = 3/120 (2%)
Frame = +1
Query: 244 ITGLPPGEYGFHVHEKGDLSGGCLSTGSHFNPEHKDHGHPNDVNRHVGDLGNVVFDENHY 423
I GL PG +GFHVH+ GD + GC+S G HFNP K HG P RHVGDLGNV +
Sbjct: 35 IKGLTPGLHGFHVHQYGDSTNGCISAGPHFNPFGKTHGGPKSEIRHVGDLGNVEAGADGV 94
Query: 424 SRIDLVDDQISLSGPHGIIGRAVVLHQKADDYGK---SDHPDSRKTGNAGGRVACGVIGI 594
++I L D ++L GP+ ++GR++V+H DD G+ +S+KTGNAG R ACGVI +
Sbjct: 95 AKIKLTDTLVTLYGPNTVVGRSMVVHAGQDDLGEGVGDKAEESKKTGNAGARAACGVIAL 154
>L20135-1|AAA28147.1| 158|Caenorhabditis elegans superoxide
dismutase protein.
Length = 158
Score = 127 bits (306), Expect = 1e-29
Identities = 59/120 (49%), Positives = 78/120 (65%), Gaps = 3/120 (2%)
Frame = +1
Query: 244 ITGLPPGEYGFHVHEKGDLSGGCLSTGSHFNPEHKDHGHPNDVNRHVGDLGNVVFDENHY 423
I GL PG +GFHVH+ GD + GC+S G HFNP K HG P RHVGDLGNV +
Sbjct: 35 IKGLTPGLHGFHVHQYGDSTNGCISAGPHFNPFGKTHGGPKSEIRHVGDLGNVEAGADGV 94
Query: 424 SRIDLVDDQISLSGPHGIIGRAVVLHQKADDYGK---SDHPDSRKTGNAGGRVACGVIGI 594
++I L D ++L GP+ ++GR++V+H DD G+ +S+KTGNAG R ACGVI +
Sbjct: 95 AKIKLTDTLVTLYGPNTVVGRSMVVHAGQDDLGEGVGDKAEESKKTGNAGARAACGVIAL 154
>AC006608-8|AAV34795.1| 158|Caenorhabditis elegans Sod (superoxide
dismutase) protein1, isoform b protein.
Length = 158
Score = 127 bits (306), Expect = 1e-29
Identities = 59/120 (49%), Positives = 78/120 (65%), Gaps = 3/120 (2%)
Frame = +1
Query: 244 ITGLPPGEYGFHVHEKGDLSGGCLSTGSHFNPEHKDHGHPNDVNRHVGDLGNVVFDENHY 423
I GL PG +GFHVH+ GD + GC+S G HFNP K HG P RHVGDLGNV +
Sbjct: 35 IKGLTPGLHGFHVHQYGDSTNGCISAGPHFNPFGKTHGGPKSEIRHVGDLGNVEAGADGV 94
Query: 424 SRIDLVDDQISLSGPHGIIGRAVVLHQKADDYGK---SDHPDSRKTGNAGGRVACGVIGI 594
++I L D ++L GP+ ++GR++V+H DD G+ +S+KTGNAG R ACGVI +
Sbjct: 95 AKIKLTDTLVTLYGPNTVVGRSMVVHAGQDDLGEGVGDKAEESKKTGNAGARAACGVIAL 154
>AC006608-7|AAF39759.1| 180|Caenorhabditis elegans Sod (superoxide
dismutase) protein1, isoform a protein.
Length = 180
Score = 127 bits (306), Expect = 1e-29
Identities = 59/120 (49%), Positives = 78/120 (65%), Gaps = 3/120 (2%)
Frame = +1
Query: 244 ITGLPPGEYGFHVHEKGDLSGGCLSTGSHFNPEHKDHGHPNDVNRHVGDLGNVVFDENHY 423
I GL PG +GFHVH+ GD + GC+S G HFNP K HG P RHVGDLGNV +
Sbjct: 57 IKGLTPGLHGFHVHQYGDSTNGCISAGPHFNPFGKTHGGPKSEIRHVGDLGNVEAGADGV 116
Query: 424 SRIDLVDDQISLSGPHGIIGRAVVLHQKADDYGK---SDHPDSRKTGNAGGRVACGVIGI 594
++I L D ++L GP+ ++GR++V+H DD G+ +S+KTGNAG R ACGVI +
Sbjct: 117 AKIKLTDTLVTLYGPNTVVGRSMVVHAGQDDLGEGVGDKAEESKKTGNAGARAACGVIAL 176
>U42833-3|AAA83577.1| 178|Caenorhabditis elegans Sod (superoxide
dismutase) protein5 protein.
Length = 178
Score = 117 bits (282), Expect = 1e-26
Identities = 58/124 (46%), Positives = 76/124 (61%), Gaps = 3/124 (2%)
Frame = +1
Query: 232 FRVGITGLPPGEYGFHVHEKGDLSGGCLSTGSHFNPEHKDHGHPNDVNRHVGDLGNVVFD 411
F I GL PG +GFH+H+ GD + GC S G HFNP +HG + V RHVGDLGNV
Sbjct: 51 FEGEIKGLSPGLHGFHIHQYGDSTDGCTSAGPHFNPCKMNHGGRDSVVRHVGDLGNVEAG 110
Query: 412 ENHYSRIDLVDDQISLSGPHGIIGRAVVLHQKADDYGK---SDHPDSRKTGNAGGRVACG 582
+ ++I D +SL G + +IGR++V+H DD G+ +S KTGNAG R ACG
Sbjct: 111 ADGVAKIKFSDKVVSLFGANTVIGRSMVVHVDRDDLGQGIDDKAEESLKTGNAGARAACG 170
Query: 583 VIGI 594
VI +
Sbjct: 171 VIAL 174
>AF022985-11|AAB69967.2| 650|Caenorhabditis elegans Hypothetical
protein T15B7.14 protein.
Length = 650
Score = 28.3 bits (60), Expect = 7.7
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +3
Query: 567 SSRLRCHRNSIDLQISHLIVLFNKIYMY 650
SSRL C+ ID ++ + VL NKI Y
Sbjct: 187 SSRLACYIEEIDSELDEVEVLHNKIKRY 214
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,521,772
Number of Sequences: 27780
Number of extensions: 327286
Number of successful extensions: 839
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 788
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 832
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2223883816
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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