Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP24_F_P05
         (876 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY661556-1|AAV70493.1|  714|Caenorhabditis elegans acetylcholine...    28   7.6  
AF078786-4|AAC26944.4|  714|Caenorhabditis elegans Sodium:neurot...    28   7.6  

>AY661556-1|AAV70493.1|  714|Caenorhabditis elegans
           acetylcholine/choline transporter protein.
          Length = 714

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 19/59 (32%), Positives = 26/59 (44%)
 Frame = +3

Query: 165 CGLVHELRKHGFEENLMRNWVCLVEHESSRDTSKTNTNRNGSKDYGLXFINDRYWCSKG 341
           C L   ++       L+ N  C+VEH SS +T+    +  GS      F ND    SKG
Sbjct: 193 CTLGTRIQCKEMNGTLLVNGSCIVEHASSNETTVIPLHDLGSIPSLKYFHNDVLMLSKG 251


>AF078786-4|AAC26944.4|  714|Caenorhabditis elegans
           Sodium:neurotransmitter symporterfamily protein 6
           protein.
          Length = 714

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 19/59 (32%), Positives = 26/59 (44%)
 Frame = +3

Query: 165 CGLVHELRKHGFEENLMRNWVCLVEHESSRDTSKTNTNRNGSKDYGLXFINDRYWCSKG 341
           C L   ++       L+ N  C+VEH SS +T+    +  GS      F ND    SKG
Sbjct: 193 CTLGTRIQCKEMNGTLLVNGSCIVEHASSNETTVIPLHDLGSIPSLKYFQNDVLMLSKG 251


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,606,491
Number of Sequences: 27780
Number of extensions: 317857
Number of successful extensions: 782
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 764
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 781
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2202903780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)