Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP24_F_P04
         (879 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC577.02 |rpl3801|rpl38-1|60S ribosomal protein L38|Schizosacc...    48   2e-06
SPAC30D11.12 |rpl3802|rpl38-2, rps38|60S ribosomal protein L38|S...    44   3e-05
SPAC19A8.12 |dcp2||mRNA decapping complex subunit Dcp2|Schizosac...    26   8.1  

>SPBC577.02 |rpl3801|rpl38-1|60S ribosomal protein
           L38|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 74

 Score = 47.6 bits (108), Expect = 2e-06
 Identities = 24/44 (54%), Positives = 30/44 (68%), Gaps = 1/44 (2%)
 Frame = -2

Query: 347 MPXEIKDIXDFLIKARXXDAXSVQIKKNPX-NVXFKVRCSRFLY 219
           MP +I DI  FL  AR  DA S +IKKN   +V FK+RCS++LY
Sbjct: 1   MPRQISDIKQFLEIARRKDATSARIKKNTNKDVKFKLRCSKYLY 44



 Score = 37.1 bits (82), Expect = 0.003
 Identities = 17/26 (65%), Positives = 20/26 (76%)
 Frame = -3

Query: 217 TLVIXDKEKAEKLKQSLPPGXQVKEV 140
           TLV+ D +KAEKL+QSLPP   V EV
Sbjct: 45  TLVVADAKKAEKLRQSLPPDLTVTEV 70


>SPAC30D11.12 |rpl3802|rpl38-2, rps38|60S ribosomal protein
           L38|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 74

 Score = 44.0 bits (99), Expect = 3e-05
 Identities = 22/44 (50%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
 Frame = -2

Query: 347 MPXEIKDIXDFLIKARXXDAXSVQIKKNPXN-VXFKVRCSRFLY 219
           MP ++ DI  FL  A   DA S ++KKN    V FK+RCSR+LY
Sbjct: 1   MPRQVTDIKLFLQLAHRGDATSARVKKNQNKAVKFKLRCSRYLY 44



 Score = 37.5 bits (83), Expect = 0.002
 Identities = 17/26 (65%), Positives = 20/26 (76%)
 Frame = -3

Query: 217 TLVIXDKEKAEKLKQSLPPGXQVKEV 140
           TLV+ D +KAEKL+QSLPP   V EV
Sbjct: 45  TLVVADAKKAEKLRQSLPPALTVTEV 70


>SPAC19A8.12 |dcp2||mRNA decapping complex subunit
           Dcp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 741

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 17/52 (32%), Positives = 26/52 (50%)
 Frame = -1

Query: 279 PNKEEPXECXVQGSMLKVPVQPWSSLTKRRLRNLSRVYLQVSKLKK*SDVTR 124
           P  +EP E   Q  +LKV  Q  S +  +R   LS+  L+  K K+ S+  +
Sbjct: 637 PRNDEPLEAANQFDLLKVSPQQKSEVPPKR-NELSQSKLKNRKKKENSETNK 687


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,325,481
Number of Sequences: 5004
Number of extensions: 32370
Number of successful extensions: 66
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)