Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP24_F_P04
         (879 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_06_0013 + 24852262-24852264,24852717-24852900,24853449-24853471     55   9e-08
11_04_0100 + 13465369-13465371,13465464-13465647,13466506-13466528     53   3e-07
07_03_0802 - 21614891-21615195,21615637-21615823,21615939-216161...    51   1e-06
10_08_0940 - 21708557-21708733,21709058-21709142,21709330-217095...    28   8.6  

>05_06_0013 + 24852262-24852264,24852717-24852900,24853449-24853471
          Length = 69

 Score = 54.8 bits (126), Expect = 9e-08
 Identities = 25/43 (58%), Positives = 32/43 (74%)
 Frame = -2

Query: 347 MPXEIKDIXDFLIKARXXDAXSVQIKKNPXNVXFKVRCSRFLY 219
           MP +I +I DFL+ AR  DA SV+IK++   V FKVRCSR+LY
Sbjct: 1   MPKQIHEIKDFLLTARRKDARSVRIKRSKDAVKFKVRCSRYLY 43



 Score = 38.3 bits (85), Expect = 0.008
 Identities = 17/26 (65%), Positives = 20/26 (76%)
 Frame = -3

Query: 217 TLVIXDKEKAEKLKQSLPPGXQVKEV 140
           TL + D +KA KLKQSLPPG  V+EV
Sbjct: 44  TLCVHDTDKANKLKQSLPPGLTVQEV 69


>11_04_0100 + 13465369-13465371,13465464-13465647,13466506-13466528
          Length = 69

 Score = 53.2 bits (122), Expect = 3e-07
 Identities = 24/43 (55%), Positives = 31/43 (72%)
 Frame = -2

Query: 347 MPXEIKDIXDFLIKARXXDAXSVQIKKNPXNVXFKVRCSRFLY 219
           MP +I +I DFL+ AR  DA SV+IK+    V FKVRCS++LY
Sbjct: 1   MPKQIHEIKDFLLTARRKDARSVRIKRTKDAVKFKVRCSKYLY 43



 Score = 38.3 bits (85), Expect = 0.008
 Identities = 17/26 (65%), Positives = 20/26 (76%)
 Frame = -3

Query: 217 TLVIXDKEKAEKLKQSLPPGXQVKEV 140
           TL + D +KA KLKQSLPPG  V+EV
Sbjct: 44  TLCVFDADKANKLKQSLPPGLTVQEV 69


>07_03_0802 -
           21614891-21615195,21615637-21615823,21615939-21616154,
           21616669-21616872,21617336-21617569,21617670-21617763,
           21618844-21618890,21619293-21619309,21620183-21620459
          Length = 526

 Score = 51.2 bits (117), Expect = 1e-06
 Identities = 23/42 (54%), Positives = 30/42 (71%)
 Frame = -2

Query: 344 PXEIKDIXDFLIKARXXDAXSVQIKKNPXNVXFKVRCSRFLY 219
           P +I +I DFL+ AR  DA SV+IK+    V FKVRCS++LY
Sbjct: 32  PKQIHEIKDFLLTARRKDARSVRIKRTKDAVKFKVRCSKYLY 73



 Score = 39.9 bits (89), Expect = 0.003
 Identities = 30/87 (34%), Positives = 39/87 (44%), Gaps = 1/87 (1%)
 Frame = -3

Query: 397 GXLDPLTVLVENYXFSTCRVKSKIS-KTF*LRRGGKTPNRSK*RRTLXMSSSRFDAQGSC 221
           G +DP+ VLV        + K     K F L    K     + +RT      +       
Sbjct: 13  GAIDPVVVLVCVVATLATQPKQIHEIKDFLLTARRKDARSVRIKRTKDAVKFKVRCSKYL 72

Query: 220 TTLVIXDKEKAEKLKQSLPPGXQVKEV 140
            TL + D +KA KLKQSLPPG  V+EV
Sbjct: 73  YTLCVFDADKANKLKQSLPPGLTVQEV 99


>10_08_0940 -
           21708557-21708733,21709058-21709142,21709330-21709551,
           21710640-21710815,21711883-21711946,21712433-21712507,
           21715114-21715199,21715297-21716715
          Length = 767

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
 Frame = +3

Query: 636 NESAN---ARGEAVCVLGALPLPRSLTRCAR 719
           +ESAN   AR EAV  +G +P+   L RC+R
Sbjct: 434 DESANVDAARSEAVMRVGGIPMLLDLARCSR 464


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,242,855
Number of Sequences: 37544
Number of extensions: 211282
Number of successful extensions: 405
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 398
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 405
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2479731924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)