Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP24_F_P03
         (888 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11B10.01 |alg2|SPBC32H8.14|mannosyltransferase complex subun...    27   4.7  
SPAC1687.20c |mis6||inner centromere protein Mis6|Schizosaccharo...    26   6.2  
SPAC1B2.05 |mcm5|nda4, SPAC3F10.01|MCM complex subunit Mcm5|Schi...    26   8.2  
SPBC1861.06c |mug131||S. pombe specific UPF0300 family protein 4...    26   8.2  

>SPBC11B10.01 |alg2|SPBC32H8.14|mannosyltransferase complex subunit
           Alg2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 511

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -2

Query: 740 FEYAICVLSASFLTFSIT*KLT 675
           F    C++S SFLTF++  KLT
Sbjct: 488 FMLGTCIVSVSFLTFTVYAKLT 509


>SPAC1687.20c |mis6||inner centromere protein
           Mis6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 672

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -3

Query: 664 WSWNVCLRLPLGALFQLHTNFITLLR 587
           +SW+V L   L  LFQL+   +T +R
Sbjct: 458 FSWDVSLAYQLSRLFQLYYKILTKIR 483


>SPAC1B2.05 |mcm5|nda4, SPAC3F10.01|MCM complex subunit
           Mcm5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = -3

Query: 769 NFCRSDCAPDLNTQSA 722
           N+CR  CAP+L+ ++A
Sbjct: 557 NYCRHKCAPNLDAEAA 572


>SPBC1861.06c |mug131||S. pombe specific UPF0300 family protein
           4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 433

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +1

Query: 751 NRFDKNSGISFNSFTR*HFRHLNKHFSQCF 840
           N+  K  G S N+F +  F+HL   F+ CF
Sbjct: 3   NQQRKVQGSSSNTFIKRAFQHLKSLFTVCF 32


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,217,046
Number of Sequences: 5004
Number of extensions: 61791
Number of successful extensions: 159
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)