Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP24_F_P02
         (961 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF098500-3|ABD94103.1|  774|Caenorhabditis elegans Temporarily a...    31   0.93 
AF098500-2|AAC67399.2|  996|Caenorhabditis elegans Temporarily a...    31   0.93 
AC006662-3|AAF39895.1|  368|Caenorhabditis elegans Hypothetical ...    31   1.2  
U41538-5|AAG00012.2|  762|Caenorhabditis elegans Hypothetical pr...    30   2.1  

>AF098500-3|ABD94103.1|  774|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 343, isoform b protein.
          Length = 774

 Score = 31.5 bits (68), Expect = 0.93
 Identities = 16/50 (32%), Positives = 27/50 (54%)
 Frame = -1

Query: 304 DQHPGWDGRPAHHHQAGEEDHLTSGNLVSWRSADNAHVPLLCDILKDLVV 155
           DQH G  G+ + HH + E  H    +  ++R+  +  + LLC I+  LV+
Sbjct: 713 DQHRG--GKKSSHHHSRETKHRIGWSPSNYRNPRDCFLNLLCFIIAPLVI 760


>AF098500-2|AAC67399.2|  996|Caenorhabditis elegans Temporarily
            assigned gene nameprotein 343, isoform a protein.
          Length = 996

 Score = 31.5 bits (68), Expect = 0.93
 Identities = 16/50 (32%), Positives = 27/50 (54%)
 Frame = -1

Query: 304  DQHPGWDGRPAHHHQAGEEDHLTSGNLVSWRSADNAHVPLLCDILKDLVV 155
            DQH G  G+ + HH + E  H    +  ++R+  +  + LLC I+  LV+
Sbjct: 935  DQHRG--GKKSSHHHSRETKHRIGWSPSNYRNPRDCFLNLLCFIIAPLVI 982


>AC006662-3|AAF39895.1|  368|Caenorhabditis elegans Hypothetical
           protein H23L24.4 protein.
          Length = 368

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -2

Query: 165 IWLLARSKFLIPNILF*YNYSSKCSLKFFYV 73
           +W    SK+L+PN +F Y  SS C+  + +V
Sbjct: 35  LWDRTYSKYLLPNSIFLYKRSSTCTRTYIFV 65


>U41538-5|AAG00012.2|  762|Caenorhabditis elegans Hypothetical
           protein R04E5.2 protein.
          Length = 762

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = +2

Query: 155 NNQIFKNVAQQRNMSVICTPPRNKVSRGEM-IFLAGLM 265
           N + F+N+ Q+    V+  PP+N  S G + +F AG+M
Sbjct: 572 NPKAFENLIQRNIREVLIVPPKNSTSPGTLNLFEAGVM 609


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,171,807
Number of Sequences: 27780
Number of extensions: 156876
Number of successful extensions: 354
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 345
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 354
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2496624284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)