Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP24_F_O24
         (1301 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC027040-1|AAH27040.1|  396|Homo sapiens Smad nuclear interactin...    34   1.3  
AY081909-1|AAL91140.1|  396|Homo sapiens Smad nuclear-interactin...    34   1.3  
AL034379-8|CAI20552.1|  396|Homo sapiens Smad nuclear interactin...    34   1.3  
AK027622-1|BAB55241.1|  396|Homo sapiens protein ( Homo sapiens ...    34   1.3  
AK022615-1|BAB14134.1|  396|Homo sapiens protein ( Homo sapiens ...    34   1.3  

>BC027040-1|AAH27040.1|  396|Homo sapiens Smad nuclear interacting
           protein 1 protein.
          Length = 396

 Score = 33.9 bits (74), Expect = 1.3
 Identities = 30/133 (22%), Positives = 46/133 (34%), Gaps = 1/133 (0%)
 Frame = +1

Query: 274 PXARXQTXGNSGQEAQTXAAXAXPRKXTGRQHRRNKRXXXPRNPPXHEENQNITRXHXXX 453
           P +     G+ G  A+   + + P+K      RR+K     RN   H     +       
Sbjct: 56  PTSEPARSGHRGNRAR-GVSRSPPKKKNKASGRRSKSPRSKRNRSPHHSTVKVK------ 108

Query: 454 XQNTEXNPRTXRKEEGHPEXXKQ-XXRXXEGDXXRXRSKXXKTXXXKXXEXXXRGPAXGR 630
            Q  E +PR  R++  H E  +Q   R    D  R R    +           +G    R
Sbjct: 109 -QEREDHPRRGREDRQHREPSEQEHRRARNSDRDRHRGHSHQRRTSNERPGSGQGQGRDR 167

Query: 631 HTEXXXQRGEXRE 669
            T+    + E RE
Sbjct: 168 DTQNLQAQEEERE 180


>AY081909-1|AAL91140.1|  396|Homo sapiens Smad nuclear-interacting
           protein 1 protein.
          Length = 396

 Score = 33.9 bits (74), Expect = 1.3
 Identities = 30/133 (22%), Positives = 46/133 (34%), Gaps = 1/133 (0%)
 Frame = +1

Query: 274 PXARXQTXGNSGQEAQTXAAXAXPRKXTGRQHRRNKRXXXPRNPPXHEENQNITRXHXXX 453
           P +     G+ G  A+   + + P+K      RR+K     RN   H     +       
Sbjct: 56  PTSEPARSGHRGNRAR-GVSRSPPKKKNKASGRRSKSPRSKRNRSPHHSTVKVK------ 108

Query: 454 XQNTEXNPRTXRKEEGHPEXXKQ-XXRXXEGDXXRXRSKXXKTXXXKXXEXXXRGPAXGR 630
            Q  E +PR  R++  H E  +Q   R    D  R R    +           +G    R
Sbjct: 109 -QEREDHPRRGREDRQHREPSEQEHRRARNSDRDRHRGHSHQRRTSNERPGSGQGQGRDR 167

Query: 631 HTEXXXQRGEXRE 669
            T+    + E RE
Sbjct: 168 DTQNLQAQEEERE 180


>AL034379-8|CAI20552.1|  396|Homo sapiens Smad nuclear interacting
           protein 1 protein.
          Length = 396

 Score = 33.9 bits (74), Expect = 1.3
 Identities = 30/133 (22%), Positives = 46/133 (34%), Gaps = 1/133 (0%)
 Frame = +1

Query: 274 PXARXQTXGNSGQEAQTXAAXAXPRKXTGRQHRRNKRXXXPRNPPXHEENQNITRXHXXX 453
           P +     G+ G  A+   + + P+K      RR+K     RN   H     +       
Sbjct: 56  PTSEPARSGHRGNRAR-GVSRSPPKKKNKASGRRSKSPRSKRNRSPHHSTVKVK------ 108

Query: 454 XQNTEXNPRTXRKEEGHPEXXKQ-XXRXXEGDXXRXRSKXXKTXXXKXXEXXXRGPAXGR 630
            Q  E +PR  R++  H E  +Q   R    D  R R    +           +G    R
Sbjct: 109 -QEREDHPRRGREDRQHREPSEQEHRRARNSDRDRHRGHSHQRRTSNERPGSGQGQGRDR 167

Query: 631 HTEXXXQRGEXRE 669
            T+    + E RE
Sbjct: 168 DTQNLQAQEEERE 180


>AK027622-1|BAB55241.1|  396|Homo sapiens protein ( Homo sapiens
           cDNA FLJ14716 fis, clone NT2RP3001150, weakly similar to
           TRANSCRIPTION TERMINATION FACTOR RHO. ).
          Length = 396

 Score = 33.9 bits (74), Expect = 1.3
 Identities = 30/133 (22%), Positives = 46/133 (34%), Gaps = 1/133 (0%)
 Frame = +1

Query: 274 PXARXQTXGNSGQEAQTXAAXAXPRKXTGRQHRRNKRXXXPRNPPXHEENQNITRXHXXX 453
           P +     G+ G  A+   + + P+K      RR+K     RN   H     +       
Sbjct: 56  PTSEPARSGHRGNRAR-GVSRSPPKKKNKASGRRSKSPRSKRNRSPHHSTVKVK------ 108

Query: 454 XQNTEXNPRTXRKEEGHPEXXKQ-XXRXXEGDXXRXRSKXXKTXXXKXXEXXXRGPAXGR 630
            Q  E +PR  R++  H E  +Q   R    D  R R    +           +G    R
Sbjct: 109 -QEREDHPRRGREDRQHREPSEQEHRRARNSDRDRHRGHSHQRRTSNERPGSGQGQGRDR 167

Query: 631 HTEXXXQRGEXRE 669
            T+    + E RE
Sbjct: 168 DTQNLQAQEEERE 180


>AK022615-1|BAB14134.1|  396|Homo sapiens protein ( Homo sapiens
           cDNA FLJ12553 fis, clone NT2RM4000733, weakly similar to
           TRANSCRIPTION TERMINATION FACTOR RHO. ).
          Length = 396

 Score = 33.9 bits (74), Expect = 1.3
 Identities = 30/133 (22%), Positives = 46/133 (34%), Gaps = 1/133 (0%)
 Frame = +1

Query: 274 PXARXQTXGNSGQEAQTXAAXAXPRKXTGRQHRRNKRXXXPRNPPXHEENQNITRXHXXX 453
           P +     G+ G  A+   + + P+K      RR+K     RN   H     +       
Sbjct: 56  PTSEPARSGHRGNRAR-GVSRSPPKKKNKASGRRSKSPRSKRNRSPHHSTVKVK------ 108

Query: 454 XQNTEXNPRTXRKEEGHPEXXKQ-XXRXXEGDXXRXRSKXXKTXXXKXXEXXXRGPAXGR 630
            Q  E +PR  R++  H E  +Q   R    D  R R    +           +G    R
Sbjct: 109 -QEREDHPRRGREDRQHREPSEQEHRRARNSDRDRHRGHSHQRRTSNERPGSGQGQGRDR 167

Query: 631 HTEXXXQRGEXRE 669
            T+    + E RE
Sbjct: 168 DTQNLQAQEEERE 180


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.304    0.120    0.340 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 91,210,016
Number of Sequences: 237096
Number of extensions: 907520
Number of successful extensions: 863
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 645
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 863
length of database: 76,859,062
effective HSP length: 92
effective length of database: 55,046,230
effective search space used: 18770764430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (21.9 bits)