Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP24_F_O16
         (879 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyce...    31   0.22 
SPAC31G5.10 |eta2||Myb family transcriptional regulator Eta2|Sch...    27   3.5  
SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion cytoch...    27   4.7  
SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion ...    27   4.7  
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni...    26   6.1  
SPCC1393.08 |||transcription factor, zf-GATA type |Schizosacchar...    26   6.1  
SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pomb...    26   6.1  
SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|c...    26   8.1  

>SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1004

 Score = 31.1 bits (67), Expect = 0.22
 Identities = 20/64 (31%), Positives = 34/64 (53%)
 Frame = +1

Query: 478  VFTIVPRHQSRVLPYQLEPLRLFTVRFQGSFLSRITGLPPSHH*THPLFKKNKFVRTIAK 657
            ++ +VP   S+   Y L   R+  + F  S LSR T +  ++   H   +KN F+R +AK
Sbjct: 924  LYKLVPGVASK--SYGLNVARMAGIPF--SILSRATEISENYEKKHRNARKNVFIRKVAK 979

Query: 658  TLLV 669
             L++
Sbjct: 980  LLMI 983


>SPAC31G5.10 |eta2||Myb family transcriptional regulator
           Eta2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -1

Query: 177 QGFADAVAKTTTNKKNMILVKFILIFLXKAGFE 79
           QGF ++VA     K+N +L K++  F   AG+E
Sbjct: 203 QGFLESVASFLNRKENSLL-KYMRAFFQVAGYE 234


>SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion
           cytochrome c oxidase assembly protein Cox1101,
           mitochondrial ribosomal protein
           Rsm22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 753

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -1

Query: 333 DRDLVQNSGILSNVLALWPFGVREPL 256
           D DL++N  + S  L  WP  +R PL
Sbjct: 394 DEDLLENVNVTSPTLKNWPRIIRPPL 419


>SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion
           cytochrome c oxidase assembly protein Cox1102,
           mitochondrial ribosomal protein
           Rsm2202|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 753

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -1

Query: 333 DRDLVQNSGILSNVLALWPFGVREPL 256
           D DL++N  + S  L  WP  +R PL
Sbjct: 394 DEDLLENVNVTSPTLKNWPRIIRPPL 419


>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
            Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2199

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 16/63 (25%), Positives = 30/63 (47%)
 Frame = -3

Query: 406  EAKTLRILRGSKRSVRMSLSN*ALGPRLSPELRDFVKCPGSMALWGPGATRLIKTVFSIK 227
            ++K +  L+     VR       L      +L+ F K PGS   +  GA  L+K++ ++ 
Sbjct: 1965 KSKLIHPLKRKVAQVRRCFQELQLDENTREDLK-FPKLPGSFLNYTDGALELVKSICAVF 2023

Query: 226  QLN 218
            +L+
Sbjct: 2024 ELS 2026


>SPCC1393.08 |||transcription factor, zf-GATA type
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 557

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +3

Query: 519 IPTGATAFIHSAFPGIFFVTYHWTSSKPPLNP 614
           IPT ++A I + FPG     + +  S+ PL P
Sbjct: 170 IPTPSSALIDTPFPGALDSEFGFDESQAPLFP 201


>SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1379

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +3

Query: 474 SRFYHRTASPK*SSSIPTGATAFIH 548
           S +Y RT++ K S ++PT  T+F H
Sbjct: 132 SGYYERTSTRKRSLTVPTPRTSFPH 156


>SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 603

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = -1

Query: 783 YWMRYPLDQVFPYFFGNMTPFS-K*SNISEPIAKLKILFD*QS 658
           +WM Y LD+     FG  + F+ K  + + P +K ++LF  QS
Sbjct: 308 FWMCYILDKNISLIFGTPSVFNDKDIDCNLPDSKYELLFGVQS 350


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,869,488
Number of Sequences: 5004
Number of extensions: 86029
Number of successful extensions: 240
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 230
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 239
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)