Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP24_F_O16
         (879 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039038-1|AAK21435.1|  877|Caenorhabditis elegans Hypothetical ...    33   0.36 
AC006637-1|AAK85476.2|  342|Caenorhabditis elegans Hypothetical ...    28   7.7  

>AF039038-1|AAK21435.1|  877|Caenorhabditis elegans Hypothetical
           protein K06A5.4 protein.
          Length = 877

 Score = 32.7 bits (71), Expect = 0.36
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = -1

Query: 495 RYDGKNEMMESSQTIPQSAPHRKYGTKYREKRKPSAYSE 379
           RY G++    S +++     HR++G +YR+ R P  Y++
Sbjct: 439 RYRGRDASSSSGRSVRFEEEHRRHGDEYRDPRGPRDYND 477


>AC006637-1|AAK85476.2|  342|Caenorhabditis elegans Hypothetical
           protein F41B4.1 protein.
          Length = 342

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 5/66 (7%)
 Frame = +3

Query: 192 EIVSTDSFEFNCFIENTVLMSR-----VAPGPQRAIEPGHLTKSLSSGLSRGPKA*FDKL 356
           EI ST   E   FI+N   + +     + P P     P H  + +   LSRGP +  ++ 
Sbjct: 29  EISSTQDRELQRFIDNNAHIIQYQERELPPPPPPRKTPSHKYEEMRRSLSRGPSSTLERY 88

Query: 357 ILTDRL 374
              D+L
Sbjct: 89  SSMDKL 94


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,969,296
Number of Sequences: 27780
Number of extensions: 471295
Number of successful extensions: 1154
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1154
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2213393798
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)