Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP24_F_O13
         (874 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB2B2.06c |||phosphoprotein phosphatase |Schizosaccharomyces ...    26   6.1  
SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces pomb...    26   8.1  
SPAC23A1.02c |||phosphoprotein phosphatase |Schizosaccharomyces ...    26   8.1  

>SPBPB2B2.06c |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 601

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 20/79 (25%), Positives = 35/79 (44%), Gaps = 5/79 (6%)
 Frame = +3

Query: 441 TQKFINLLPNDVHAIGNHE-FDDGVADLSR--YIATLQAPVVAANIDI--SDVPLLQGII 605
           T      LP D+  IGNHE +   V++ +   ++       +A+N+ I  S   L Q   
Sbjct: 119 TNNIFTYLPYDILTIGNHELYQASVSNNTHEYFVPHWNGTYLASNVQIFNSSNELEQFAA 178

Query: 606 KPHVVVTKNGRNIGVIGLI 662
           +     TK+G  +  +G +
Sbjct: 179 ESAYFTTKHGVRVLAVGFL 197


>SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1073

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
 Frame = -2

Query: 312  SIGCH---YCDTSETGVRSLQIERENHCNALCEEEKYQFPPLESVKIKKQILY*TLSYRR 142
            SIG H   Y    + GV+ L ++ +  CN+ CE       P+ S+   K  +Y T S R 
Sbjct: 886  SIGKHGLCYATGRKIGVKMLDLDSKKFCNSDCELPVRS--PIVSMSTYKDYVY-TSSLRD 942

Query: 141  NV 136
            +V
Sbjct: 943  SV 944


>SPAC23A1.02c |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 430

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +3

Query: 633 GRNIGVIGLITTETPIASKSENVKFLDXFLLSK 731
           G NIG + LI T   +   S+N   +  FL+ K
Sbjct: 340 GGNIGFVKLIATNDVLTESSKNTPSVVTFLIQK 372


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,271,054
Number of Sequences: 5004
Number of extensions: 69214
Number of successful extensions: 169
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)