Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP24_F_O13
(874 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U52517-1|AAA97927.1| 846|Caenorhabditis elegans hum-3 protein. 30 2.5
AF098989-1|AAK18955.1| 1219|Caenorhabditis elegans Defective spe... 30 2.5
Z78537-4|CAB01721.1| 569|Caenorhabditis elegans Hypothetical pr... 29 4.3
Z73098-8|CAA97334.2| 303|Caenorhabditis elegans Hypothetical pr... 29 4.3
Z68014-14|CAA92030.1| 569|Caenorhabditis elegans Hypothetical p... 29 4.3
U97194-2|AAN84846.1| 806|Caenorhabditis elegans Prion-like-(q/n... 29 4.3
U97194-1|AAK68236.1| 788|Caenorhabditis elegans Prion-like-(q/n... 29 4.3
AF170425-1|AAF89696.1| 788|Caenorhabditis elegans putative MAP-... 29 4.3
Z81589-9|CAJ85769.1| 926|Caenorhabditis elegans Hypothetical pr... 28 7.6
Z81589-8|CAB04720.1| 923|Caenorhabditis elegans Hypothetical pr... 28 7.6
>U52517-1|AAA97927.1| 846|Caenorhabditis elegans hum-3 protein.
Length = 846
Score = 29.9 bits (64), Expect = 2.5
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +2
Query: 671 NTDCIKIGERKISGSIPVVEREAKL 745
N DCI++ E+K SG +++ EAKL
Sbjct: 315 NLDCIELFEKKASGLFDLLDEEAKL 339
>AF098989-1|AAK18955.1| 1219|Caenorhabditis elegans Defective
spermatogenesis protein15 protein.
Length = 1219
Score = 29.9 bits (64), Expect = 2.5
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +2
Query: 671 NTDCIKIGERKISGSIPVVEREAKL 745
N DCI++ E+K SG +++ EAKL
Sbjct: 517 NLDCIELFEKKASGLFDLLDEEAKL 541
>Z78537-4|CAB01721.1| 569|Caenorhabditis elegans Hypothetical
protein W04G3.8 protein.
Length = 569
Score = 29.1 bits (62), Expect = 4.3
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = +3
Query: 333 YHEITTLVKAYPETLVLNAGDVFQGTYWYTLLKWNVTQKFIN 458
Y I+ VK YP T+++ D F+ Y +L+W Q FIN
Sbjct: 500 YAIISNWVK-YPVTVLVRDPDTFKTKYQKEVLRWLEDQGFIN 540
>Z73098-8|CAA97334.2| 303|Caenorhabditis elegans Hypothetical
protein T21C9.7 protein.
Length = 303
Score = 29.1 bits (62), Expect = 4.3
Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 3/32 (9%)
Frame = +3
Query: 153 TVFNIVFVFLFLRTQAVEIDTFPLHI---VHY 239
T N F FLF R + E D FPL + +HY
Sbjct: 66 TCNNCTFAFLFERNSSTEEDNFPLQVFFTIHY 97
>Z68014-14|CAA92030.1| 569|Caenorhabditis elegans Hypothetical
protein W04G3.8 protein.
Length = 569
Score = 29.1 bits (62), Expect = 4.3
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = +3
Query: 333 YHEITTLVKAYPETLVLNAGDVFQGTYWYTLLKWNVTQKFIN 458
Y I+ VK YP T+++ D F+ Y +L+W Q FIN
Sbjct: 500 YAIISNWVK-YPVTVLVRDPDTFKTKYQKEVLRWLEDQGFIN 540
>U97194-2|AAN84846.1| 806|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 21,
isoform b protein.
Length = 806
Score = 29.1 bits (62), Expect = 4.3
Identities = 12/38 (31%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Frame = +3
Query: 189 RTQAVEIDTFPLHIVHYNDFHARFEETS-LQFPMCRNN 299
+ + VE+D LH HY+ RF++T+ L++ + +N+
Sbjct: 418 KCELVEVDVAQLHDCHYDGCEKRFQKTTDLEYHISKNH 455
>U97194-1|AAK68236.1| 788|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 21,
isoform a protein.
Length = 788
Score = 29.1 bits (62), Expect = 4.3
Identities = 12/38 (31%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Frame = +3
Query: 189 RTQAVEIDTFPLHIVHYNDFHARFEETS-LQFPMCRNN 299
+ + VE+D LH HY+ RF++T+ L++ + +N+
Sbjct: 400 KCELVEVDVAQLHDCHYDGCEKRFQKTTDLEYHISKNH 437
>AF170425-1|AAF89696.1| 788|Caenorhabditis elegans putative
MAP-like protein protein.
Length = 788
Score = 29.1 bits (62), Expect = 4.3
Identities = 12/38 (31%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Frame = +3
Query: 189 RTQAVEIDTFPLHIVHYNDFHARFEETS-LQFPMCRNN 299
+ + VE+D LH HY+ RF++T+ L++ + +N+
Sbjct: 400 KCELVEVDVAQLHDCHYDGCEKRFQKTTDLEYHISKNH 437
>Z81589-9|CAJ85769.1| 926|Caenorhabditis elegans Hypothetical
protein T08G5.5b protein.
Length = 926
Score = 28.3 bits (60), Expect = 7.6
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = -1
Query: 574 MSIFAATTGACRVAM*RDKSATPSSNSWLPIAWTSFGSKLMNF 446
M F+ + M +DK+ T S P W F ++L+NF
Sbjct: 169 MVFFSVRNEYFSMTMQKDKTTTSPSEGSTPEGWNGFVTRLLNF 211
>Z81589-8|CAB04720.1| 923|Caenorhabditis elegans Hypothetical
protein T08G5.5a protein.
Length = 923
Score = 28.3 bits (60), Expect = 7.6
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = -1
Query: 574 MSIFAATTGACRVAM*RDKSATPSSNSWLPIAWTSFGSKLMNF 446
M F+ + M +DK+ T S P W F ++L+NF
Sbjct: 169 MVFFSVRNEYFSMTMQKDKTTTSPSEGSTPEGWNGFVTRLLNF 211
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,208,363
Number of Sequences: 27780
Number of extensions: 389689
Number of successful extensions: 887
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 857
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 887
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2192413762
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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