Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP24_F_O12
         (1145 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    36   0.008
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    30   0.69 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   6.5  
SPBC1685.01 |pmp1||dual-specificity MAP kinase phosphatase Pmp1|...    26   8.5  

>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 36.3 bits (80), Expect = 0.008
 Identities = 26/71 (36%), Positives = 27/71 (38%)
 Frame = +3

Query: 495 GKGXXRGGXXXXXPXGXGXQGXGXNXGEXQGEGGXXKKXXGXPGEKKXXPGXXGEGEXXG 674
           G G   GG     P   G  G G   GE    GG      G PG  +  PG  G G   G
Sbjct: 189 GFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGG-FGGGPGGFEGGPGGFG-GGPGG 246

Query: 675 PKGXXGGXGGG 707
             G  GG GGG
Sbjct: 247 FGGGLGGFGGG 257



 Score = 32.7 bits (71), Expect = 0.098
 Identities = 21/54 (38%), Positives = 22/54 (40%)
 Frame = +3

Query: 546 GXQGXGXNXGEXQGEGGXXKKXXGXPGEKKXXPGXXGEGEXXGPKGXXGGXGGG 707
           G  G G + G   G GG      G PG     PG  G G   G  G  GG GGG
Sbjct: 212 GFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFG-GGLGGFGGGPGGFGGG 264



 Score = 31.1 bits (67), Expect = 0.30
 Identities = 23/75 (30%), Positives = 23/75 (30%)
 Frame = +3

Query: 483 PXXXGKGXXRGGXXXXXPXGXGXQGXGXNXGEXQGEGGXXKKXXGXPGEKKXXPGXXGEG 662
           P   G G    G       G      G N G   G GG        PG      G  GEG
Sbjct: 158 PVAAGLGGLALGGLASHALGNLFHHRGHNGGGFGGFGGGSGGPPPGPGGFGGFGGFGGEG 217

Query: 663 EXXGPKGXXGGXGGG 707
              G  G  GG  GG
Sbjct: 218 HHHGGHGGFGGGPGG 232


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.9 bits (64), Expect = 0.69
 Identities = 13/34 (38%), Positives = 14/34 (41%)
 Frame = -3

Query: 594 PLPPXFPXGWXPXPXXPAPGXXXXXXPPXXSPFP 493
           P+PP  P    P P  P PG      PP   P P
Sbjct: 750 PVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 21/72 (29%), Positives = 23/72 (31%)
 Frame = -3

Query: 708 PPPXFPXFXLLXPPXPLPXFXXGXXFSPRXFPXFFXXTPLPPXFPXGWXPXPXXPAPGXX 529
           PP   P      PP   P    G   +P   P      PLP   P      P  PAP   
Sbjct: 420 PPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAP--- 476

Query: 528 XXXXPPXXSPFP 493
               PP  +P P
Sbjct: 477 ----PPAPAPAP 484


>SPBC1685.01 |pmp1||dual-specificity MAP kinase phosphatase
           Pmp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 278

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 11/32 (34%), Positives = 12/32 (37%)
 Frame = -3

Query: 606 FXXTPLPPXFPXGWXPXPXXPAPGXXXXXXPP 511
           F   P+PP FP    P    P P       PP
Sbjct: 36  FTPCPVPPSFPKASKPNSNQPYPNGPVCIYPP 67


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.303    0.151    0.484 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,151,959
Number of Sequences: 5004
Number of extensions: 14444
Number of successful extensions: 13
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 611599874
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 17 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 44 (22.0 bits)