Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP24_F_O11
         (896 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    24   2.6  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   3.7  
SPAC222.08c |||imidazoleglycerol-phosphate synthase |Schizosacch...    26   6.3  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    23   9.3  

>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 23.8 bits (49), Expect(2) = 2.6
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -3

Query: 828 PPPPPPP 808
           PPPPPPP
Sbjct: 238 PPPPPPP 244



 Score = 21.8 bits (44), Expect(2) = 2.6
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = -3

Query: 843 YXRXXPPPPPP 811
           Y    PPPPPP
Sbjct: 187 YNPPPPPPPPP 197


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -3

Query: 825 PPPPPPXXGKXKXKPXV 775
           PPPPPP   + + KP +
Sbjct: 311 PPPPPPPSRRNRGKPPI 327



 Score = 24.2 bits (50), Expect(2) = 3.7
 Identities = 10/27 (37%), Positives = 11/27 (40%)
 Frame = -3

Query: 891 PXKXXPXXPXGGGGXXYXRXXPPPPPP 811
           P +     P  G G       PPPPPP
Sbjct: 317 PSRRNRGKPPIGNGSSNSSLPPPPPPP 343



 Score = 21.0 bits (42), Expect(2) = 3.7
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = -3

Query: 825 PPPPPP 808
           PPPPPP
Sbjct: 361 PPPPPP 366


>SPAC222.08c |||imidazoleglycerol-phosphate synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 234

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
 Frame = +3

Query: 6   FTTDLTIGNSLRFDILDSAHQVIST---APLVS 95
           FTTD+T+  S++F+  +  H   +T   AP+ S
Sbjct: 141 FTTDITVTESMQFEATEPLHSFSATFIRAPVAS 173


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 22.6 bits (46), Expect(2) = 9.3
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = -3

Query: 825 PPPPPPXXG 799
           PPPPPP  G
Sbjct: 761 PPPPPPPPG 769



 Score = 21.0 bits (42), Expect(2) = 9.3
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = -3

Query: 828 PPPPPP 811
           PPPPPP
Sbjct: 732 PPPPPP 737


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,388,917
Number of Sequences: 5004
Number of extensions: 35972
Number of successful extensions: 141
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)