Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP24_F_O11
         (896 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    26   0.047
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   3.8  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   8.7  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   8.7  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 25.8 bits (54), Expect(2) = 0.047
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -3

Query: 828  PPPPPPPXXGK 796
            PPPPPPP  G+
Sbjct: 1356 PPPPPPPSSGQ 1366



 Score = 23.8 bits (49), Expect = 2.2
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -3

Query: 828  PPPPPPP 808
            PPPPPPP
Sbjct: 1355 PPPPPPP 1361



 Score = 21.8 bits (44), Expect(2) = 0.047
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -3

Query: 837  RXXPPPPPPP 808
            R   PPPPPP
Sbjct: 1351 RQQQPPPPPP 1360


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = -3

Query: 828 PPPPPPPXXGKXKXK 784
           PPPPPP   G    K
Sbjct: 343 PPPPPPSSSGPDSAK 357


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 8.7
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +3

Query: 57   SAHQVISTAPLVS*RPPLNLHKLTMNFAKIL 149
            SA  ++ T P     PP+NL    ++ ++IL
Sbjct: 994  SAELIVRTEPQRPAGPPINLEARALSSSEIL 1024


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 8.7
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +3

Query: 57   SAHQVISTAPLVS*RPPLNLHKLTMNFAKIL 149
            SA  ++ T P     PP+NL    ++ ++IL
Sbjct: 990  SAELIVRTEPQRPAGPPINLEARALSSSEIL 1020


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,390
Number of Sequences: 438
Number of extensions: 3456
Number of successful extensions: 14
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29025360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)