Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP24_F_O09
         (1098 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces po...    34   0.031
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    33   0.071
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      31   0.28 
SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po...    27   6.1  
SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA syntheta...    26   8.1  

>SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 284

 Score = 34.3 bits (75), Expect = 0.031
 Identities = 25/76 (32%), Positives = 31/76 (40%)
 Frame = +3

Query: 237 KXXKKXKKXXXKXXKKKXKXXXXXKXKKXKKIRXXXKXXXXXKKKKXXXKKKKXXXXXKK 416
           K  K+ K    K  KKK         KK +KI    K     K K+   KK+K     K+
Sbjct: 164 KREKRKKHSSKKKSKKKTSTGSALDPKKLEKITKKKKKEHKKKDKESSSKKRKSGSSDKE 223

Query: 417 XRXXXKKKKKXEXKXK 464
                KKKKK + K K
Sbjct: 224 ----EKKKKKIKLKDK 235



 Score = 29.9 bits (64), Expect = 0.66
 Identities = 20/71 (28%), Positives = 25/71 (35%)
 Frame = +1

Query: 685 KKXXXXKXXXKKKKXXXXXXXXXXXKKXKXEXXKKKKKKXXKXXKXXKXKXXKKKKXXXX 864
           K+    K   KKK             K   +  KKKKK+  K  K    K  K       
Sbjct: 164 KREKRKKHSSKKKSKKKTSTGSALDPKKLEKITKKKKKEHKKKDKESSSKKRKSGSSDKE 223

Query: 865 EKKXKRXXXKE 897
           EKK K+   K+
Sbjct: 224 EKKKKKIKLKD 234



 Score = 27.9 bits (59), Expect = 2.7
 Identities = 23/83 (27%), Positives = 29/83 (34%), Gaps = 2/83 (2%)
 Frame = +1

Query: 358 KXKKKKXXXRKKKXKXXXKXXXXKXKKKKKXXKKXKXXXKXXXXXXKXKXXXXXXXXK-- 531
           + K+KK   +KK  K          KK +K  KK K   K        K        K  
Sbjct: 165 REKRKKHSSKKKSKKKTSTGSALDPKKLEKITKKKKKEHKKKDKESSSKKRKSGSSDKEE 224

Query: 532 KKXKXXKRKKKKXXXXXXKKXKK 600
           KK K  K K K       +K K+
Sbjct: 225 KKKKKIKLKDKPESTSSVEKVKE 247



 Score = 27.9 bits (59), Expect = 2.7
 Identities = 18/65 (27%), Positives = 23/65 (35%)
 Frame = +2

Query: 758 KKKXXKKXKKKKKKKXXKXXXKXKXXXXKKRKXXXKRKXKKEXXXKKXXXXXXKXXXXXK 937
           KK   KK  KKK         K      KK+K   K+K K+    K+      K     K
Sbjct: 169 KKHSSKKKSKKKTSTGSALDPKKLEKITKKKKKEHKKKDKESSSKKRKSGSSDKEEKKKK 228

Query: 938 XXRXK 952
             + K
Sbjct: 229 KIKLK 233



 Score = 26.6 bits (56), Expect = 6.1
 Identities = 16/65 (24%), Positives = 26/65 (40%)
 Frame = +2

Query: 683 KKKXXXXKXXXRRKKXXKXXXXXXXKKKXXKKXKKKKKKKXXKXXXKXKXXXXKKRKXXX 862
           K+K    K   ++K            +K  KK KK+ KKK  +   K +      ++   
Sbjct: 167 KRKKHSSKKKSKKKTSTGSALDPKKLEKITKKKKKEHKKKDKESSSKKRKSGSSDKEEKK 226

Query: 863 KRKXK 877
           K+K K
Sbjct: 227 KKKIK 231


>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 33.1 bits (72), Expect = 0.071
 Identities = 20/54 (37%), Positives = 21/54 (38%)
 Frame = -2

Query: 731 LLFFFFXXFFXXXXFFXXXXFXFXXXLXXXFXXFFXXFXXFXFXFFXFFXXFXF 570
           LLFFFF  FF    F     F F   L   F  +F  F    F FF F     F
Sbjct: 117 LLFFFFLLFFLSFSF----SFSFLFFLSQIFIVYFSSFPILHFLFFFFLCVCVF 166



 Score = 33.1 bits (72), Expect = 0.071
 Identities = 17/53 (32%), Positives = 19/53 (35%)
 Frame = -1

Query: 402 FXFFFSXXXFFFFXFXXXFFXXXLFFXFFFXXXXXXFXFFFFXXXXXFFFXFF 244
           F FF      F F F   FF   +F  +F       F FFFF     F    F
Sbjct: 119 FFFFLLFFLSFSFSFSFLFFLSQIFIVYFSSFPILHFLFFFFLCVCVFLSFLF 171



 Score = 29.5 bits (63), Expect = 0.87
 Identities = 19/58 (32%), Positives = 19/58 (32%)
 Frame = -1

Query: 450 LFFFFFXFXXXXFXXXFXFFFSXXXFFFFXFXXXFFXXXLFFXFFFXXXXXXFXFFFF 277
           L FFFF      F   F F F     F   F        L F FFF      F  F F
Sbjct: 117 LLFFFFLLFFLSFSFSFSFLFFLSQIFIVYFSS---FPILHFLFFFFLCVCVFLSFLF 171



 Score = 27.1 bits (57), Expect = 4.6
 Identities = 15/47 (31%), Positives = 15/47 (31%)
 Frame = -3

Query: 898 FLXXXFFFXFSLXXXFSFFXXXXFXFXXXFXXFFFFFFFXFLXXFFF 758
           F    FF  FS    F FF    F           F FF FL    F
Sbjct: 120 FFFLLFFLSFSFSFSFLFFLSQIFIVYFSSFPILHFLFFFFLCVCVF 166



 Score = 27.1 bits (57), Expect = 4.6
 Identities = 15/51 (29%), Positives = 16/51 (31%)
 Frame = -3

Query: 802 FFFFFFFXFLXXFFFXXXXXXXLXXFFSSXXXFXXXXFFFXXXXXXXXFXF 650
           FF  FF  F   F F          +FSS        FFF        F F
Sbjct: 121 FFLLFFLSFSFSFSFLFFLSQIFIVYFSSFPILHFLFFFFLCVCVFLSFLF 171


>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 31.1 bits (67), Expect = 0.28
 Identities = 31/117 (26%), Positives = 32/117 (27%), Gaps = 6/117 (5%)
 Frame = -1

Query: 612 FXXXFFX--FFXXXXXXFFFFPFXXFXFFFXXXXXXXXFXFXXXXXX----FXXXLXFFX 451
           F   FF   FF      F F     F F F        F            F     F+ 
Sbjct: 18  FFRLFFVCSFFFPLLYSFIFATLHAFVFLFSHTLVSSQFRRLKLPYHHHHTFTIEAFFYW 77

Query: 450 LFFFFFXFXXXXFXXXFXFFFSXXXFFFFXFXXXFFXXXLFFXFFFXXXXXXFXFFF 280
            FFFFF F           F          F   FF   LF  F F      F FFF
Sbjct: 78  FFFFFFFFSHCR-RFHIAIFIHPYDSNVVPFFCFFFYFSLFSFFSFLFTSLHFNFFF 133



 Score = 30.3 bits (65), Expect = 0.50
 Identities = 28/127 (22%), Positives = 31/127 (24%)
 Frame = -1

Query: 909 FXXXFFXXXSFXFFLXXXXFLFFXXFXFXXFXXFXXFFFFFFXXFXFXFFXXXXXXXXXX 730
           F   F    S  F L      FF       F     F F F        F          
Sbjct: 7   FASLFSSFESLFFRLFFVCSFFFPLLYSFIFATLHAFVFLFSHTLVSSQFRRLKLPYHHH 66

Query: 729 XFFLLXXXFXXXXFFXXXFXXFXXFXXXXFXXXFXXFXXFXXXFFXFFXXXXXXFFFFPF 550
             F +   F    FF   F     F    F   +         FF +F       F F  
Sbjct: 67  HTFTIEAFFYWFFFFFFFFSHCRRFHIAIFIHPYDSNVVPFFCFFFYFSLFSFFSFLFTS 126

Query: 549 XXFXFFF 529
             F FFF
Sbjct: 127 LHFNFFF 133



 Score = 28.7 bits (61), Expect = 1.5
 Identities = 16/49 (32%), Positives = 18/49 (36%)
 Frame = -3

Query: 394 FFFXXXXFFFXFXXXXFXXXLIFXXFFXXFXXXFFXFFFXXXXXFFFXF 248
           FF+    FFF F         IF   +      FF FFF      FF F
Sbjct: 74  FFYWFFFFFFFFSHCRRFHIAIFIHPYDSNVVPFFCFFFYFSLFSFFSF 122


>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 474

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = +3

Query: 759 KKXKXRXXKKKKKKXXKXXKXXKKXXXXKKEKXXXREKXKKKXXKRK 899
           KK K     +K +      +  ++    KKEK   +EK +KK  K+K
Sbjct: 426 KKRKSVESSEKDEDEAAKKEEKRRKKEAKKEKKEKKEKKEKKEKKKK 472


>SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA synthetases
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 450

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 16/50 (32%), Positives = 19/50 (38%)
 Frame = +3

Query: 759 KKXKXRXXKKKKKKXXKXXKXXKKXXXXKKEKXXXREKXKKKXXKRKXXK 908
           KK K      ++       K  K     KKEK   +EK  KK  K K  K
Sbjct: 217 KKEKKEGKPSQEASVKSVEKAPKGLEGAKKEKQNKKEKKDKKDKKDKKEK 266


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.296    0.119    0.290 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 671,771
Number of Sequences: 5004
Number of extensions: 5930
Number of successful extensions: 116
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 579724962
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 17 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 44 (21.9 bits)