Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP24_F_O08
(837 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomy... 30 0.47
SPAC23A1.06c |cmk2|mkp2|MAPK-activated protein kinase Cmk2|Schiz... 28 1.9
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc... 27 3.3
SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion cytoch... 26 7.6
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce... 26 7.6
SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion ... 26 7.6
SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M... 26 7.6
SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit Cdc21... 26 7.6
SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces pomb... 26 7.6
SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase Cdc... 26 7.6
>SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 603
Score = 29.9 bits (64), Expect = 0.47
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = +3
Query: 357 HLEYHEGERREIDTNSPGALASRESSLGGDQDVRVA 464
H++ HE + ++T +PG ++S + L DQ V+
Sbjct: 199 HIQAHEMAQESLETRNPGNISSSSAPLASDQSPTVS 234
>SPAC23A1.06c |cmk2|mkp2|MAPK-activated protein kinase
Cmk2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 504
Score = 27.9 bits (59), Expect = 1.9
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = +3
Query: 414 LASRESSLGGDQDVRVAGLPG 476
LA++ + GGD+++RVA PG
Sbjct: 41 LAAKNVNAGGDEEIRVANYPG 61
>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
Bms1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1121
Score = 27.1 bits (57), Expect = 3.3
Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 5/71 (7%)
Frame = +1
Query: 241 QGRDPDLEAREHEAREYM-----LHLDKATGLRKNRASLAEWEYTSNITKENEEKSIQTH 405
Q R L A E + R+ + LH DK + +A+ E Y + KE Q +
Sbjct: 1034 QKRTVLLNAEERKVRDLLQKVMTLHTDKEAKRKAKKAAEHE-RYHKRMQKEE-----QAY 1087
Query: 406 LELSRQEKAAW 438
+E R+EKA W
Sbjct: 1088 IEKKREEKAEW 1098
>SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion
cytochrome c oxidase assembly protein Cox1101,
mitochondrial ribosomal protein
Rsm22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 753
Score = 25.8 bits (54), Expect = 7.6
Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = +2
Query: 620 RVXVIYLWNLR*-LKYSPRAKTLKELKHAWVEWHNAAGATAKKNFTDYVN 766
R +++L+NLR + + + + W+NA + NF+DY N
Sbjct: 7 RYKILFLYNLRNCFTFQNQRCLIPYGTTTTIRWYNANFQAVQNNFSDYKN 56
>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 964
Score = 25.8 bits (54), Expect = 7.6
Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Frame = -3
Query: 478 NPGSPATRTSWSPPRLLSLDA-RAPGEFVSISLRS 377
NP P +RTSW P+ + APG S S S
Sbjct: 765 NPAFPQSRTSWMMPQSFDTSSLNAPGAKDSSSFSS 799
>SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion
cytochrome c oxidase assembly protein Cox1102,
mitochondrial ribosomal protein
Rsm2202|Schizosaccharomyces pombe|chr 1|||Manual
Length = 753
Score = 25.8 bits (54), Expect = 7.6
Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = +2
Query: 620 RVXVIYLWNLR*-LKYSPRAKTLKELKHAWVEWHNAAGATAKKNFTDYVN 766
R +++L+NLR + + + + W+NA + NF+DY N
Sbjct: 7 RYKILFLYNLRNCFTFQNQRCLIPYGTTTTIRWYNANFQAVQNNFSDYKN 56
>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
1|||Manual
Length = 663
Score = 25.8 bits (54), Expect = 7.6
Identities = 16/67 (23%), Positives = 34/67 (50%)
Frame = +1
Query: 367 ITKENEEKSIQTHLELSRQEKAAWEETKMYGWQDFQDFTLRRMFKKYSQLGVAALPDDKF 546
+++E+ E+ ++ E + ++K E + + ++L+ F QLG P+DK
Sbjct: 538 LSEEDIERMVKEAEEFAEEDKILKERIEARNTLENYAYSLKGQFDDDEQLGGKVDPEDK- 596
Query: 547 QALMRTV 567
QA++ V
Sbjct: 597 QAVLDAV 603
>SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit
Cdc21|Schizosaccharomyces pombe|chr 3|||Manual
Length = 911
Score = 25.8 bits (54), Expect = 7.6
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +1
Query: 667 STSQDPEGVEACLGGVAQRGR 729
ST D EACLG + +RGR
Sbjct: 872 STRLDASDFEACLGALERRGR 892
>SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 983
Score = 25.8 bits (54), Expect = 7.6
Identities = 10/45 (22%), Positives = 26/45 (57%)
Frame = +1
Query: 334 ASLAEWEYTSNITKENEEKSIQTHLELSRQEKAAWEETKMYGWQD 468
+SL+ W +KE ++ ++ +++++SR A ++G+Q+
Sbjct: 187 SSLSSWMMILESSKEIKDSTLLSYMQISRYTLKACRRLVVFGFQN 231
>SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase
Cdc7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1062
Score = 25.8 bits (54), Expect = 7.6
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = +2
Query: 671 RAKTLKELKHAWVEWHNAAGATAKKNFTDYVNLYNEAAK 787
R KT K LKH WV + + + + D V YNE K
Sbjct: 247 RIKTRKLLKHPWVIMNQTSSKFS--DAIDEVQKYNERVK 283
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,986,616
Number of Sequences: 5004
Number of extensions: 55439
Number of successful extensions: 184
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 412451140
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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