Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP24_F_O08
         (837 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          24   1.5  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      24   1.5  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   6.1  

>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
 Frame = +1

Query: 598 KICSYKNESXCDLSLEPEITEIFSTS-QDP 684
           KI  Y  E+     + P   EIFSTS +DP
Sbjct: 387 KILGYNLEAASKYQIVPSALEIFSTSMKDP 416


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
 Frame = +1

Query: 598 KICSYKNESXCDLSLEPEITEIFSTS-QDP 684
           KI  Y  E+     + P   EIFSTS +DP
Sbjct: 387 KILGYNLEAASKYQIVPSALEIFSTSMKDP 416


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 21/78 (26%), Positives = 30/78 (38%), Gaps = 3/78 (3%)
 Frame = +1

Query: 514 LGVAALPDDKFQALMRTVSGM---ESNYATAKICSYKNESXCDLSLEPEITEIFSTSQDP 684
           LG AAL     +    T SG    E       +    N+   +  L   + E  +  +  
Sbjct: 414 LGAAALVAPGMEEPTNTASGSNEDEDETPLDPVVVISNDKSTEFFLATVVEE--AACRFS 471

Query: 685 EGVEACLGGVAQRGRRDS 738
              +A LGG  Q GR+DS
Sbjct: 472 AVAQAQLGGERQNGRKDS 489


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 206,565
Number of Sequences: 438
Number of extensions: 4056
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26824317
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)