Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP24_F_O06
         (973 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0716 + 19702100-19702250,19702366-19702463,19702527-197026...    28   9.8  

>09_04_0716 +
           19702100-19702250,19702366-19702463,19702527-19702611,
           19702950-19703020,19703119-19703209,19703292-19703367,
           19704047-19704584
          Length = 369

 Score = 28.3 bits (60), Expect = 9.8
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = +3

Query: 117 YQQLYSSLLHGASVPMDWVKSLSFPGYSPLRTG 215
           Y+  + S++ G+ V +D+ +    PG+ P R+G
Sbjct: 134 YEDAHHSIIDGSEVLVDYYRQQLMPGWIPRRSG 166


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,116,648
Number of Sequences: 37544
Number of extensions: 288505
Number of successful extensions: 728
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 711
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 728
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2823252340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)