Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP24_F_O06
         (973 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41508-1|AAG00027.3|  944|Caenorhabditis elegans Set (trithorax/...    29   3.8  
Z77664-2|CAB01217.1|  643|Caenorhabditis elegans Hypothetical pr...    29   6.6  
Z73970-5|CAA98248.1|  643|Caenorhabditis elegans Hypothetical pr...    29   6.6  
AY037802-1|AAK94767.1|  669|Caenorhabditis elegans GLY-2 protein.      28   8.7  
AY037800-1|AAK94765.1|  661|Caenorhabditis elegans GLY-2 protein.      28   8.7  
AF154122-1|AAF74523.1|  669|Caenorhabditis elegans N-acetylgluco...    28   8.7  
AC006625-9|AAK68273.1|  669|Caenorhabditis elegans Glycosylation...    28   8.7  

>U41508-1|AAG00027.3|  944|Caenorhabditis elegans Set
            (trithorax/polycomb) domaincontaining protein 19 protein.
          Length = 944

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 20/70 (28%), Positives = 32/70 (45%)
 Frame = +3

Query: 60   NSGKYGAFKERRGEIYFFFYQQLYSSLLHGASVPMDWVKSLSFPGYSPLRTGYLPPFNSF 239
            NS ++G F+        FF+ Q+Y S++    +    V S S  GYS  +  Y+P  N+ 
Sbjct: 859  NSQQHGQFQVCSNGSLGFFHPQIYQSMMTPPGIVPHAVISNSALGYSSYQ-AYIPNNNNS 917

Query: 240  YYPFAQRSND 269
               +   S D
Sbjct: 918  EQQYPSTSED 927


>Z77664-2|CAB01217.1|  643|Caenorhabditis elegans Hypothetical
           protein C29A12.6 protein.
          Length = 643

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 18/49 (36%), Positives = 26/49 (53%)
 Frame = +1

Query: 220 SRLSTPFTIHLPKEAMTTSCTPRRTTRKFASSHIYEKTFFQYLQQGHFK 366
           S++ T FTI    + MTT   P  TTR+  ++ I  KT  +YL +   K
Sbjct: 311 SKVDTKFTITRTFKKMTT--IPMSTTRRMTTTTIRPKTTKKYLSRSTSK 357


>Z73970-5|CAA98248.1|  643|Caenorhabditis elegans Hypothetical
           protein C29A12.6 protein.
          Length = 643

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 18/49 (36%), Positives = 26/49 (53%)
 Frame = +1

Query: 220 SRLSTPFTIHLPKEAMTTSCTPRRTTRKFASSHIYEKTFFQYLQQGHFK 366
           S++ T FTI    + MTT   P  TTR+  ++ I  KT  +YL +   K
Sbjct: 311 SKVDTKFTITRTFKKMTT--IPMSTTRRMTTTTIRPKTTKKYLSRSTSK 357


>AY037802-1|AAK94767.1|  669|Caenorhabditis elegans GLY-2 protein.
          Length = 669

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +3

Query: 210 TGYLPPFNSFYYPFAQRSNDYELHTEKNY 296
           + ++ P   FYY  +  S  Y   +EKNY
Sbjct: 15  SAFITPLGFFYYTISNESKRYSEESEKNY 43


>AY037800-1|AAK94765.1|  661|Caenorhabditis elegans GLY-2 protein.
          Length = 661

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +3

Query: 210 TGYLPPFNSFYYPFAQRSNDYELHTEKNY 296
           + ++ P   FYY  +  S  Y   +EKNY
Sbjct: 7   SAFITPLGFFYYTISNESKRYSEESEKNY 35


>AF154122-1|AAF74523.1|  669|Caenorhabditis elegans
           N-acetylglucosaminyltransferase V protein.
          Length = 669

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +3

Query: 210 TGYLPPFNSFYYPFAQRSNDYELHTEKNY 296
           + ++ P   FYY  +  S  Y   +EKNY
Sbjct: 15  SAFITPLGFFYYTISNESKRYSEESEKNY 43


>AC006625-9|AAK68273.1|  669|Caenorhabditis elegans Glycosylation
           related protein 2 protein.
          Length = 669

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +3

Query: 210 TGYLPPFNSFYYPFAQRSNDYELHTEKNY 296
           + ++ P   FYY  +  S  Y   +EKNY
Sbjct: 15  SAFITPLGFFYYTISNESKRYSEESEKNY 43


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,008,007
Number of Sequences: 27780
Number of extensions: 236896
Number of successful extensions: 651
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 635
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 651
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2521399358
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)