Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP24_F_O04
         (879 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual    33   0.041
SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ...    28   2.0  
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po...    27   3.5  
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po...    27   4.7  
SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c...    26   8.1  

>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1496

 Score = 33.5 bits (73), Expect = 0.041
 Identities = 16/57 (28%), Positives = 31/57 (54%)
 Frame = -2

Query: 440 LTVIVRYTNPAKTRTRRQDAKRT*NLMLPGRLLCSPITQAMLTSNHAAFITVIRSTT 270
           LT IVRY NP K + R Q   R  + + P  ++ + +T ++   + ++F+  ++  T
Sbjct: 419 LTPIVRYKNPVKNKKRSQLTSRISSSVSPSNVIPNSLTSSVSNFSVSSFLNNLKEDT 475


>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1877

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 16/44 (36%), Positives = 20/44 (45%)
 Frame = -2

Query: 686  IIVIEKHFFFVTVALKIVN*ARMS*LSSIVRGSMNDTSLIWFSG 555
            ++  E HF FV+  L+I      S L S       D  L WFSG
Sbjct: 1184 VLTRELHFKFVSFGLRIAENLLNSPLGSRFYNLCVDAGLCWFSG 1227


>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 658

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
 Frame = +1

Query: 127 MTKPIPYNTS--PMSC-NTGLLFTLTTYIGADTSTLPALQSSETPLISGTEVV 276
           MT P+   T+  PM+   T +  T TT    +T+T+P +++  TP++    ++
Sbjct: 141 MTTPMEETTTILPMAAMTTPMEETTTTTPMVETTTIPTVETMTTPMVEAMTIL 193


>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1159

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -3

Query: 604  PLCEDR*MTRP*SGFQVGLEFAAAHSP 524
            P+ +D   T P SGF+ G  F A +SP
Sbjct: 980  PMAKDAGDTAPASGFKSGFSFGANNSP 1006


>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +1

Query: 151 TSPMSCNTGLLFTLTTYIGADTSTLPALQSSETP 252
           T+P + +TG LF      G  ++  PA  +S TP
Sbjct: 162 TTPAAASTGSLFGKPAATGTTSNAPPASSTSTTP 195


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,997,053
Number of Sequences: 5004
Number of extensions: 57633
Number of successful extensions: 147
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)