Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP24_F_O04
         (879 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1566 + 27909297-27909390,27909542-27909645,27912899-279130...    30   2.8  
03_04_0006 + 16257288-16259522                                         30   2.8  
07_03_1395 - 26255776-26256043,26256194-26256414,26256550-262567...    29   4.9  
07_01_0563 + 4178176-4178295,4178391-4178834                           29   4.9  

>08_02_1566 +
           27909297-27909390,27909542-27909645,27912899-27913098,
           27913214-27913314,27913427-27914130,27914671-27914834,
           27914941-27915100
          Length = 508

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 11/35 (31%), Positives = 22/35 (62%)
 Frame = +1

Query: 418 VYLTITVRTPVLMLHRLDIVVASFFIMVYNTYARQ 522
           VY+ +  R P+ +LH +++++   F  +Y+  ARQ
Sbjct: 402 VYMLVKYRLPLEILHLVNLLLCGLFSRLYSNLARQ 436


>03_04_0006 + 16257288-16259522
          Length = 744

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 16/36 (44%), Positives = 23/36 (63%)
 Frame = +3

Query: 498 GVQYLRQTAGE*AAANSSPT*KPDQGRVIHRSSHNG 605
           G Q  R TAG  A+ N+ P+  PD GR++ RS+ +G
Sbjct: 483 GRQQRRLTAG--ASNNAFPSSSPDGGRLVFRSTRDG 516


>07_03_1395 -
           26255776-26256043,26256194-26256414,26256550-26256786,
           26257476-26257776,26258027-26258106
          Length = 368

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 15/53 (28%), Positives = 29/53 (54%)
 Frame = +1

Query: 385 SCRLVLVFAGLVYLTITVRTPVLMLHRLDIVVASFFIMVYNTYARQLVNEPQQ 543
           S RL+L  AGL Y    + T  ++ + + I VA    + +  YA++ ++E ++
Sbjct: 280 SGRLILTLAGLKYHNHRLTTVEIVYNVISITVAFLVAIGFTVYAKRALDEMER 332


>07_01_0563 + 4178176-4178295,4178391-4178834
          Length = 187

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 13/29 (44%), Positives = 20/29 (68%)
 Frame = -2

Query: 302 AAFITVIRSTTSVPLMRGVSEDCRAGKVL 216
           AA  TV+ + + VPL+RG S + R+G V+
Sbjct: 126 AATATVLSAASLVPLLRGESAEARSGGVM 154


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,393,878
Number of Sequences: 37544
Number of extensions: 397694
Number of successful extensions: 818
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 802
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 818
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2479731924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)