Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP24_F_O04
         (879 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four) int...    31   1.4  
U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical pr...    30   2.5  
AL033514-26|CAA22110.1| 1144|Caenorhabditis elegans Hypothetical...    29   4.4  
AF068713-3|AAC17793.1|  286|Caenorhabditis elegans Serpentine re...    29   5.8  
AC024882-17|AAF60937.1|  321|Caenorhabditis elegans Serpentine r...    29   5.8  

>U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four)
            interacting proteinprotein 1 protein.
          Length = 2153

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = +1

Query: 85   NCLC*IQNIPNFVKMTKPI-PYNTSPMSCNTGLLFTLTTYIGADTST 222
            NC     ++ N +  T P+ P N +P+SC +GL    T Y  A   T
Sbjct: 1179 NCNVRQTHLANVINTTIPLTPLNDAPISCYSGLFINGTAYSSAGWQT 1225


>U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical protein
            F57F4.4 protein.
          Length = 2090

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +1

Query: 85   NCLC*IQNIPNFVKMTKPI-PYNTSPMSCNTGLLFTLTTYIGA 210
            NC     ++ N +  T P+ P N +P+SC +GL    T Y  A
Sbjct: 1179 NCNVQQTHLANVINTTIPLTPLNDAPISCYSGLFINGTAYSSA 1221


>AL033514-26|CAA22110.1| 1144|Caenorhabditis elegans Hypothetical
           protein Y75B8A.26 protein.
          Length = 1144

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 9/39 (23%), Positives = 24/39 (61%)
 Frame = +1

Query: 388 CRLVLVFAGLVYLTITVRTPVLMLHRLDIVVASFFIMVY 504
           C   L+ A ++ + I++ TP+ ++    +++  +F+M+Y
Sbjct: 702 CTQTLLNACMILVLISISTPIFLVCAAPLILIYYFVMIY 740


>AF068713-3|AAC17793.1|  286|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 66 protein.
          Length = 286

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 16/40 (40%), Positives = 26/40 (65%), Gaps = 3/40 (7%)
 Frame = +1

Query: 415 LVYLTI---TVRTPVLMLHRLDIVVASFFIMVYNTYARQL 525
           LV+ TI    +R  +++L  LD VVASFF + Y+ + R++
Sbjct: 84  LVWPTIPLGAIRATLVLLITLDRVVASFFPIFYHNHRRRI 123


>AC024882-17|AAF60937.1|  321|Caenorhabditis elegans Serpentine
           receptor, class z protein28 protein.
          Length = 321

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = +1

Query: 457 LHRLDIVVASFFIMVYNTYARQLVNEPQQIQARPENQIRDVSFIDPRTM 603
           LH LD+  A FF++V +  A  L+N    I     N     S + P+T+
Sbjct: 247 LHDLDVGYALFFMVVLDMIAIPLINSISYIVCNKRNVKAFYSSLKPKTI 295


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,133,566
Number of Sequences: 27780
Number of extensions: 340283
Number of successful extensions: 912
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 843
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 910
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2213393798
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)