Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP24_F_O02
         (843 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.11 |||amidohydrolase|Schizosaccharomyces pombe|chr 1|||...    28   1.9  
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual      27   2.5  
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp...    26   5.8  
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    26   7.7  
SPAC1B3.03c |wis2|cyp5|cyclophilin family peptidyl-prolyl cis-tr...    26   7.7  
SPAC1B3.08 |||COP9 signalosome complex subunit 12 |Schizosacchar...    26   7.7  

>SPAC26A3.11 |||amidohydrolase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 322

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
 Frame = +1

Query: 415 ISVLTHCTTIIYP*GSVSLATLXEKLPTQQALQAVQD--FLACGVENNLLTEDYHVVGHQ 588
           I+    C+ +IYP G+ +L+T           +AV +  F+AC      +  DYH  GH 
Sbjct: 206 IAARNGCSVMIYP-GAFNLSTGPLHWELLARARAVDNEMFVACCAPARDMNADYHSWGHS 264

Query: 589 QLI 597
            ++
Sbjct: 265 TVV 267


>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1489

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +3

Query: 270 NDCFTDEECLLSVNSLRQHHMRLAGFKDLGYSFV 371
           N  FTDE+  + V  LRQ ++ L  FK L   F+
Sbjct: 162 NLSFTDEDVSIIVRRLRQSNVILPNFKALSADFM 195


>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
           Spt6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1365

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = -1

Query: 183 WEFRRIRTLHSGFRNSPRTPTNNRDGATNIFATCFRF 73
           W+ RR   +H+    +  TP  +++   NIF  C +F
Sbjct: 337 WQHRRDYIVHNNRERNTITPLLSQNDLWNIFFLCTKF 373


>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1692

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 8/54 (14%)
 Frame = +3

Query: 240 DLVVIQHTVSNDCFTDEE---CL----LSVNSLRQHHMR-LAGFKDLGYSFVAG 377
           +L ++ + + NDCFT  E   CL    LS N L +   +    F DL + FV+G
Sbjct: 810 ELYLVDNRLGNDCFTALEYFKCLKVLNLSYNYLTEIPSKFFQNFSDLKHLFVSG 863


>SPAC1B3.03c |wis2|cyp5|cyclophilin family peptidyl-prolyl cis-trans
           isomerase Wis2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 356

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = -2

Query: 197 TPFGDGNFAAFGRCIQGSETHQEHQQIIETVQPTSLQPVL 78
           TP  DG    FG+ IQG  T +  +  +ET     + PV+
Sbjct: 122 TPHLDGKHVVFGKVIQGKSTVRTIEN-LETKNDDPVVPVV 160


>SPAC1B3.08 |||COP9 signalosome complex subunit 12
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 423

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -2

Query: 182 GNFAAFGRCIQGSETHQEHQQIIETVQPT 96
           GN   FG+C+Q +ET     +I  T++ T
Sbjct: 314 GNLGEFGKCLQKNETLLAKTKIYLTLEGT 342


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,176,477
Number of Sequences: 5004
Number of extensions: 66769
Number of successful extensions: 151
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 416455520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)