Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP24_F_O02
         (843 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41528-5|AAM51514.2|  389|Caenorhabditis elegans Hypothetical pr...    31   1.0  
DQ139948-1|ABA29469.1|  381|Caenorhabditis elegans putative prot...    31   1.0  
Z81500-6|CAB04099.1|  221|Caenorhabditis elegans Hypothetical pr...    29   3.1  
Z92827-2|CAB07327.2|  394|Caenorhabditis elegans Hypothetical pr...    28   7.2  

>U41528-5|AAM51514.2|  389|Caenorhabditis elegans Hypothetical
           protein C15C7.7 protein.
          Length = 389

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = -2

Query: 536 QAKKSWTACSACWVGSFSXKVANETDPYGYIIVVQCV 426
           +  K  T  S   V S+S   +NETDP GYI+   C+
Sbjct: 2   RVSKVLTLASFISVCSYSEAKSNETDPNGYIVFCPCM 38


>DQ139948-1|ABA29469.1|  381|Caenorhabditis elegans putative protein
           O-fucosyltransferase1 protein.
          Length = 381

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = -2

Query: 536 QAKKSWTACSACWVGSFSXKVANETDPYGYIIVVQCV 426
           +  K  T  S   V S+S   +NETDP GYI+   C+
Sbjct: 2   RVSKVLTLASFISVCSYSEAKSNETDPNGYIVFCPCM 38


>Z81500-6|CAB04099.1|  221|Caenorhabditis elegans Hypothetical
           protein F11D11.8 protein.
          Length = 221

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 12/61 (19%)
 Frame = +3

Query: 270 NDCFTDEECLLS-VNSLRQHHMR-------LAGFKDLGYSFVAGGNGKIYE----GAGWN 413
           ++CF D ECLL+  NS   H+          A +KD+ YS V   +G IY      AGW+
Sbjct: 48  DECFEDSECLLAFFNSACFHYYTELPDATCPASYKDIKYS-VTSDSGDIYSWKKTDAGWS 106

Query: 414 H 416
           +
Sbjct: 107 Y 107


>Z92827-2|CAB07327.2|  394|Caenorhabditis elegans Hypothetical
           protein C29F7.2 protein.
          Length = 394

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +3

Query: 552 LID*RLPRRWSPAVDXHAKSWSCTAIRNRK 641
           +ID ++  R SP  D H    +CT++ NRK
Sbjct: 273 IIDWQITHRGSPMEDFHHIMSTCTSVENRK 302


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,802,868
Number of Sequences: 27780
Number of extensions: 382452
Number of successful extensions: 849
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 816
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 849
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2087513582
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)