Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP24_F_N16
(860 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0578 + 4295386-4296489,4297394-4297507 256 2e-68
03_06_0298 - 32925441-32925998,32926371-32926730,32927161-329272... 253 1e-67
10_02_0199 + 6668902-6669293,6669825-6669882 34 0.17
06_02_0298 + 13921310-13921834,13921923-13922063,13923601-139239... 33 0.22
08_02_1278 - 25838146-25839411 32 0.51
04_04_0028 - 22243272-22243577,22244564-22244713,22244919-222456... 31 1.2
06_01_0017 + 189346-189561,189614-189905,190024-190043 31 1.6
03_05_0366 - 23505755-23506441 30 2.1
08_02_1318 - 26111031-26111276,26112139-26112427,26112936-261130... 29 3.6
07_01_1064 + 9385330-9385432,9386181-9386236,9386938-9387082,938... 29 4.8
03_06_0513 - 34432798-34433043,34433272-34433436,34433557-344338... 28 8.3
>07_01_0578 + 4295386-4296489,4297394-4297507
Length = 405
Score = 256 bits (627), Expect = 2e-68
Identities = 122/223 (54%), Positives = 148/223 (66%), Gaps = 1/223 (0%)
Frame = +3
Query: 195 VFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTIAESWGTGRAVARIPRVRGGGTHR 374
VF+AP+RPD+V VH +S N RQPY VS+ AGHQT AESWGTGRAV+RIPRV GGGTHR
Sbjct: 31 VFRAPLRPDVVRFVHRLLSCNKRQPYAVSRRAGHQTSAESWGTGRAVSRIPRVPGGGTHR 90
Query: 375 SGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIIEK 554
+GQGAFGNMCRGGRMFAPTK WR+WH ARGH IE
Sbjct: 91 AGQGAFGNMCRGGRMFAPTKTWRKWHRRVNVHLRRVAVASALAATSVPSLVLARGHRIET 150
Query: 555 IPELPLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKG 734
+PELPLV++D + I KT QA+ L+++ A++D K S +R GKGKMRNRR I RKG
Sbjct: 151 VPELPLVISDSAESIEKTSQAIKILKQVGAYADAEKAKDSVGIRPGKGKMRNRRYINRKG 210
Query: 735 PLIIFNKD-QGLTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGR 860
PLI++ + + +AFRN+PGV+ APGGHLGR
Sbjct: 211 PLIVYGTEGSKIVKAFRNLPGVDVANVERLNLLDLAPGGHLGR 253
>03_06_0298 -
32925441-32925998,32926371-32926730,32927161-32927230,
32927642-32927797,32929181-32929242,32929339-32929352,
32930421-32930520,32931474-32932574
Length = 806
Score = 253 bits (620), Expect = 1e-67
Identities = 122/223 (54%), Positives = 147/223 (65%), Gaps = 1/223 (0%)
Frame = +3
Query: 195 VFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTIAESWGTGRAVARIPRVRGGGTHR 374
V +APIRPD+V H +S N RQPY VS+ AGHQT AESWGTGRAV+RIPRV GGGTHR
Sbjct: 30 VLRAPIRPDVVTFTHKLLSCNRRQPYAVSRRAGHQTSAESWGTGRAVSRIPRVPGGGTHR 89
Query: 375 SGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIIEK 554
+GQGAFGNMCRGGRMFAPTK WRRWH ARGH IE
Sbjct: 90 AGQGAFGNMCRGGRMFAPTKIWRRWHRRVNIRLRRIAVASALAATAVPSLVLARGHRIEG 149
Query: 555 IPELPLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKG 734
+PE PLVV+D ++ I KT Q++ L+++ A++D K S +RAGKGKMRNRR I RKG
Sbjct: 150 VPEFPLVVSDSIESIEKTAQSIKVLKQIGAYADAEKTKDSVAIRAGKGKMRNRRYINRKG 209
Query: 735 PLIIFNKD-QGLTRAFRNIPGVEXXXXXXXXXXXXAPGGHLGR 860
PLI++ + + +AFRN+PGV+ APGGHLGR
Sbjct: 210 PLIVYGTEGSKVVKAFRNLPGVDVANVERLNLLDLAPGGHLGR 252
>10_02_0199 + 6668902-6669293,6669825-6669882
Length = 149
Score = 33.9 bits (74), Expect = 0.17
Identities = 17/37 (45%), Positives = 19/37 (51%)
Frame = +3
Query: 306 AESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGR 416
A+SW TGRA A + R R GG R A N G R
Sbjct: 36 AQSWATGRAAAELGRGRKGGRRRGLAQAAANSGEGNR 72
>06_02_0298 +
13921310-13921834,13921923-13922063,13923601-13923951,
13924071-13924130,13924261-13924380,13924569-13924718
Length = 448
Score = 33.5 bits (73), Expect = 0.22
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = -2
Query: 412 PPRHMLPKAP*PDLWVPPP 356
PPRH++P+ P P WVPPP
Sbjct: 308 PPRHLVPRGPAPP-WVPPP 325
>08_02_1278 - 25838146-25839411
Length = 421
Score = 32.3 bits (70), Expect = 0.51
Identities = 15/36 (41%), Positives = 24/36 (66%)
Frame = -1
Query: 635 APQEDDSLFGLVDLLDFVSYNQGKLGNLFNNVSSSL 528
A +E LF L+D+LD V+ +G+L LF+ S++L
Sbjct: 89 AAREPQRLFRLLDMLDAVARERGRLDELFSGESATL 124
>04_04_0028 -
22243272-22243577,22244564-22244713,22244919-22245656,
22247233-22247331,22247541-22247933,22248806-22248961
Length = 613
Score = 31.1 bits (67), Expect = 1.2
Identities = 23/61 (37%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Frame = +2
Query: 677 ASSCW*G*NAQPSSYPA*GAPHNLQQGSGS-DTRLPQH-PRCGAPECXQAEPTEAGSGRS 850
A S W G + S P G LQQ S + P H PR G P A PT AG+ +
Sbjct: 2 AQSAWIGRSMSQRSPPPCGGARTLQQLSSTLSFSTPFHRPRVGTPLDANAMPTSAGARPT 61
Query: 851 S 853
S
Sbjct: 62 S 62
>06_01_0017 + 189346-189561,189614-189905,190024-190043
Length = 175
Score = 30.7 bits (66), Expect = 1.6
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Frame = -1
Query: 629 QEDDS--LFGLVDLLDFVSYNQGKLGNLFNNVSSSLNERWDAGSSNGCCQGR--SPLSEV 462
+EDD L G ++ F + + N+ +S L+ +WDAGS + SPLS V
Sbjct: 75 KEDDKYVLHGWQKVMSFQARDSSN-SKAGNDSTSKLSFKWDAGSCSSASSSAMYSPLSAV 133
Query: 461 DATVPAP 441
A AP
Sbjct: 134 SAPAKAP 140
>03_05_0366 - 23505755-23506441
Length = 228
Score = 30.3 bits (65), Expect = 2.1
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Frame = +3
Query: 192 FVFKAPIRPDLVNDVHVSMSKNSR-QPYCVSKEAGHQTIAESWGTGRAVARIPRVRGGGT 368
++ AP D +V S + R P C S E + AES TG A R R+ G T
Sbjct: 108 WIHAAPTAADDEKEVARSNAHARRPDPRCPSDEEDEEEAAESGATGLAHTRAGRIHAGPT 167
Query: 369 HRSGQGA 389
+ + + A
Sbjct: 168 NDNDEEA 174
>08_02_1318 -
26111031-26111276,26112139-26112427,26112936-26113036,
26113628-26113878,26114842-26114865,26115793-26116129
Length = 415
Score = 29.5 bits (63), Expect = 3.6
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = -1
Query: 296 VTSLLAHAVRLPRVLGHRNVNIIDQVRTYGRLEHEXGGAWLHPA 165
+TS+ H RL L R++ + +R YG HE G A+ PA
Sbjct: 343 LTSVAGHYGRLDGDLVVRSLTFVSNMRAYGPFGHEDGVAFDLPA 386
>07_01_1064 +
9385330-9385432,9386181-9386236,9386938-9387082,
9387126-9387298,9388058-9388129,9388222-9388336,
9388418-9388521,9388604-9388645,9388932-9389144,
9389621-9389689
Length = 363
Score = 29.1 bits (62), Expect = 4.8
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = +3
Query: 216 PDLVNDVHVSMSKNSRQPYCVSKEAGHQTIAESWGTGRAVARIP 347
PD++ + H+ + KN R +A I +G G VA++P
Sbjct: 63 PDVIQNYHLCVVKNRRLDSDTIAKASQMKIIMQYGVGLEVAQLP 106
>03_06_0513 -
34432798-34433043,34433272-34433436,34433557-34433842,
34434972-34435054,34435388-34435495,34435687-34435944,
34436388-34436555,34436865-34437090,34437923-34438035,
34438180-34438548,34439475-34439516,34439576-34439686,
34439883-34440086
Length = 792
Score = 28.3 bits (60), Expect = 8.3
Identities = 14/44 (31%), Positives = 20/44 (45%)
Frame = -1
Query: 806 QELHTGDVAEGACQTLILVEDYEGPLTLDTTTVAHFTLTSTKTL 675
Q H GDVA C + E P T + H+ +STK++
Sbjct: 626 QTRHHGDVAISKCLNIGFRNVRESPQTCEIEDAKHYLFSSTKSV 669
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,692,477
Number of Sequences: 37544
Number of extensions: 546912
Number of successful extensions: 1792
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1693
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1788
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2409218220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -