Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP24_F_N15
         (887 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L11247-2|AAK84521.1| 1274|Caenorhabditis elegans Npc1 (human nie...    30   1.9  
Z82261-2|CAB05145.1|  336|Caenorhabditis elegans Hypothetical pr...    29   5.9  
Z82261-1|CAB05144.1|  336|Caenorhabditis elegans Hypothetical pr...    29   5.9  
AF100659-3|AAC68969.2|  334|Caenorhabditis elegans Serpentine re...    29   5.9  
Z68314-9|CAA92667.2| 2862|Caenorhabditis elegans Hypothetical pr...    28   7.8  
Z66497-12|CAA91289.2| 2862|Caenorhabditis elegans Hypothetical p...    28   7.8  
U70846-2|ABI18146.1|  647|Caenorhabditis elegans Hypothetical pr...    28   7.8  
U70846-1|AAB09104.4|  510|Caenorhabditis elegans Hypothetical pr...    28   7.8  
AB223006-1|BAE16563.1| 2862|Caenorhabditis elegans Mediator comp...    28   7.8  

>L11247-2|AAK84521.1| 1274|Caenorhabditis elegans Npc1 (human niemann
            pick c disease)related protein 2 protein.
          Length = 1274

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = +3

Query: 669  LLSCQDKNTVEIVIATIVSQKYKHEYLHKLIEQWKNS-LEF*RSRGXC 809
            L  C D +    + +   ++ YK  YLH  +  W +S L+F   RG C
Sbjct: 899  LAGCDDNSMGNKIRSLAYAENYKGNYLHGDVNIWLDSYLQFMHPRGSC 946


>Z82261-2|CAB05145.1|  336|Caenorhabditis elegans Hypothetical
           protein C35D6.2 protein.
          Length = 336

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 17/43 (39%), Positives = 21/43 (48%)
 Frame = -1

Query: 698 YCIFVLAAKQYPCISISLFGLTITSFV*YVFLTLTIPTLSDTY 570
           YCI +   K+   +  SLF L  TSFV    L LT+  L   Y
Sbjct: 40  YCILLKTPKEMSSVKWSLFNLQFTSFV----LDLTLSFLCTAY 78


>Z82261-1|CAB05144.1|  336|Caenorhabditis elegans Hypothetical
           protein C35D6.1 protein.
          Length = 336

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 17/43 (39%), Positives = 21/43 (48%)
 Frame = -1

Query: 698 YCIFVLAAKQYPCISISLFGLTITSFV*YVFLTLTIPTLSDTY 570
           YCI +   K+   +  SLF L  TSFV    L LT+  L   Y
Sbjct: 40  YCILLKTPKEMSSVKWSLFNLQFTSFV----LDLTLSFLCTAY 78


>AF100659-3|AAC68969.2|  334|Caenorhabditis elegans Serpentine
           receptor, class z protein23 protein.
          Length = 334

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +3

Query: 486 YYTIFLVVLYCFFLVILALFRYLPAMVEI 572
           Y+  F      FFL +LA F Y+P M+ I
Sbjct: 193 YFIYFAFYYTIFFLPVLASFLYIPIMISI 221


>Z68314-9|CAA92667.2| 2862|Caenorhabditis elegans Hypothetical
           protein K08F8.6 protein.
          Length = 2862

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +1

Query: 94  ESVEPTSRFENVFYKNSICRHHLHNDCELC 183
           ES+ PT +  N F+K SICR  L    E+C
Sbjct: 789 ESILPTPK-GNKFFKGSICRKGLRGYDEIC 817


>Z66497-12|CAA91289.2| 2862|Caenorhabditis elegans Hypothetical
           protein K08F8.6 protein.
          Length = 2862

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +1

Query: 94  ESVEPTSRFENVFYKNSICRHHLHNDCELC 183
           ES+ PT +  N F+K SICR  L    E+C
Sbjct: 789 ESILPTPK-GNKFFKGSICRKGLRGYDEIC 817


>U70846-2|ABI18146.1|  647|Caenorhabditis elegans Hypothetical
           protein D1073.1b protein.
          Length = 647

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 18/59 (30%), Positives = 34/59 (57%)
 Frame = +2

Query: 140 IVFVAIICIMIVSCASAWDFFKELEGVGQRVRDSIISAGPAIDVLQKAKGLVXSSESKE 316
           +VF+ +IC++IV   SA  F+  L+ +   +R+ I+S    I + Q+ +    S E++E
Sbjct: 191 VVFLIVICLLIV--VSALAFYHRLK-LQSFLREKILSFRKRISLAQELQTRRASQETEE 246


>U70846-1|AAB09104.4|  510|Caenorhabditis elegans Hypothetical
           protein D1073.1a protein.
          Length = 510

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 18/59 (30%), Positives = 34/59 (57%)
 Frame = +2

Query: 140 IVFVAIICIMIVSCASAWDFFKELEGVGQRVRDSIISAGPAIDVLQKAKGLVXSSESKE 316
           +VF+ +IC++IV   SA  F+  L+ +   +R+ I+S    I + Q+ +    S E++E
Sbjct: 191 VVFLIVICLLIV--VSALAFYHRLK-LQSFLREKILSFRKRISLAQELQTRRASQETEE 246


>AB223006-1|BAE16563.1| 2862|Caenorhabditis elegans Mediator complex
           subunit Med13 protein.
          Length = 2862

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +1

Query: 94  ESVEPTSRFENVFYKNSICRHHLHNDCELC 183
           ES+ PT +  N F+K SICR  L    E+C
Sbjct: 789 ESILPTPK-GNKFFKGSICRKGLRGYDEIC 817


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,009,203
Number of Sequences: 27780
Number of extensions: 333482
Number of successful extensions: 982
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 948
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 981
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2244863852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)