Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP24_F_N12
         (893 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    34   0.031
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    33   0.055
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    32   0.13 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   4.8  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   6.3  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 33.9 bits (74), Expect = 0.031
 Identities = 17/41 (41%), Positives = 17/41 (41%)
 Frame = +1

Query: 421 KXPPPPGXGGXXXGPXPLPPPXXPXPPXXXGGXGXSPPPXG 543
           K PPPP        P P P P  P P    GG    PPP G
Sbjct: 730 KSPPPPPPAVIVPTPAPAPIP-VPPPAPIMGGPPPPPPPPG 769



 Score = 31.9 bits (69), Expect = 0.13
 Identities = 15/36 (41%), Positives = 16/36 (44%)
 Frame = +2

Query: 425 PPPPRXXGXXFXGPXPXPPPKXPXPXXXGGGXGFPP 532
           PPPP   G    GP P PPP  P     GG   + P
Sbjct: 762 PPPPPPPGVAGAGPPPPPPP--PPAVSAGGSRYYAP 795



 Score = 30.3 bits (65), Expect = 0.39
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = +1

Query: 427 PPPPGXGGXXXGPXPLPPP 483
           PPPPG  G    P P PPP
Sbjct: 765 PPPPGVAGAGPPPPPPPPP 783



 Score = 28.7 bits (61), Expect = 1.2
 Identities = 17/53 (32%), Positives = 17/53 (32%)
 Frame = +3

Query: 420 KXPPPPGXXGXXFXAPXPXPPXKXPXPXFXGGGXXFPPPXGGXXXXPKXXGXP 578
           K PPPP         P P P    P     GG    PPP G     P     P
Sbjct: 730 KSPPPP-PPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781



 Score = 28.7 bits (61), Expect = 1.2
 Identities = 17/41 (41%), Positives = 17/41 (41%)
 Frame = +2

Query: 413 PXKXPPPPRXXGXXFXGPXPXPPPKXPXPXXXGGGXGFPPP 535
           P   PPP    G    GP P PPP    P   G G   PPP
Sbjct: 748 PIPVPPPAPIMG----GPPPPPPP----PGVAGAGPPPPPP 780



 Score = 28.3 bits (60), Expect = 1.6
 Identities = 13/37 (35%), Positives = 14/37 (37%)
 Frame = +1

Query: 427 PPPPGXGGXXXGPXPLPPPXXPXPPXXXGGXGXSPPP 537
           PPPP       G  P PPP  P      G    +P P
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAP 797



 Score = 27.1 bits (57), Expect = 3.6
 Identities = 17/46 (36%), Positives = 18/46 (39%)
 Frame = +3

Query: 426 PPPPGXXGXXFXAPXPXPPXKXPXPXFXGGGXXFPPPXGGXXXXPK 563
           PPPPG  G    A  P PP   P P    GG  +  P       PK
Sbjct: 765 PPPPGVAG----AGPPPPP--PPPPAVSAGGSRYYAPAPQAEPEPK 804



 Score = 25.8 bits (54), Expect = 8.3
 Identities = 13/38 (34%), Positives = 15/38 (39%), Gaps = 2/38 (5%)
 Frame = +2

Query: 380 PXPGGGXGXFXPXKXPPPP--RXXGXXFXGPXPXPPPK 487
           P P G  G   P   PPPP     G  +  P P   P+
Sbjct: 765 PPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAPQAEPE 802


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 33.1 bits (72), Expect = 0.055
 Identities = 31/92 (33%), Positives = 33/92 (35%), Gaps = 2/92 (2%)
 Frame = -2

Query: 694 GGXFXXXFXGGGAXXKXPPXGXFLGFGXFXGXXXKXFFXGXPXXXGXXXXPPXGGGKXXP 515
           GG F     GGG+    P  G F GFG F G        G     G    P  GG +  P
Sbjct: 187 GGGFGGF--GGGSGGPPPGPGGFGGFGGFGGEGHHHGGHG-----GFGGGP--GGFEGGP 237

Query: 514 PPXXXGXGXFXGGXG--XGAXKXXPXXPGGGG 425
                G G F GG G   G        PGG G
Sbjct: 238 GGFGGGPGGFGGGLGGFGGGPGGFGGGPGGHG 269


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 31.9 bits (69), Expect = 0.13
 Identities = 16/41 (39%), Positives = 16/41 (39%), Gaps = 4/41 (9%)
 Frame = +1

Query: 427 PPPPGXGGXXXGPXPLPPPX----XPXPPXXXGGXGXSPPP 537
           PPPP       G  PLPP       P PP      G  PPP
Sbjct: 338 PPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPP 378


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 11/35 (31%), Positives = 13/35 (37%)
 Frame = +1

Query: 433  PPGXGGXXXGPXPLPPPXXPXPPXXXGGXGXSPPP 537
            PP        P P+  P  P  P    G   +PPP
Sbjct: 1699 PPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPP 1733



 Score = 26.6 bits (56), Expect = 4.8
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = +1

Query: 427  PPPPGXGGXXXGPXPLPPPXXP 492
            PPPP       GP   PPP  P
Sbjct: 1715 PPPPSAPPMPAGPPSAPPPPLP 1736


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 12/27 (44%), Positives = 12/27 (44%)
 Frame = +2

Query: 413 PXKXPPPPRXXGXXFXGPXPXPPPKXP 493
           P   PPPP   G  F  P   PPP  P
Sbjct: 6   PGNPPPPPPPPG--FEPPSQPPPPPPP 30


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.315    0.153    0.527 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,756,554
Number of Sequences: 5004
Number of extensions: 23610
Number of successful extensions: 117
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)