Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP24_F_N07
         (875 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1827.02c |||cholinephosphate cytidylyltransferase |Schizosac...   113   4e-26
SPAC15E1.05c |||ethanolamine-phosphate cytidylyltransferase |Sch...    57   4e-09
SPCC24B10.17 |emp24||COPII-coated vesicle component Emp24 |Schiz...    27   2.7  
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo...    26   8.1  
SPAC3H1.06c |||membrane transporter |Schizosaccharomyces pombe|c...    26   8.1  
SPBC32H8.06 |mug93||TPR repeat protein, meiotically spliced|Schi...    26   8.1  
SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces pombe...    26   8.1  

>SPCC1827.02c |||cholinephosphate cytidylyltransferase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 354

 Score =  113 bits (271), Expect = 4e-26
 Identities = 50/74 (67%), Positives = 62/74 (83%)
 Frame = +1

Query: 529 GRKVRVYSDGIYDMFHQGHARQLQQAKTVFPNVYLIVGVCSDQLTHSRKGRTVMTEDERY 708
           GR VRVY+DG++D+FH GH RQL+QAK VFPNV+LIVG+ +DQLTH  KG TVM + ER 
Sbjct: 91  GRPVRVYADGVFDLFHIGHMRQLEQAKKVFPNVHLIVGLPNDQLTHRLKGLTVMNDKERA 150

Query: 709 EAVRHCXYVDEVVE 750
           EA+RHC +VDEV+E
Sbjct: 151 EALRHCKWVDEVLE 164


>SPAC15E1.05c |||ethanolamine-phosphate cytidylyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 365

 Score = 56.8 bits (131), Expect = 4e-09
 Identities = 30/78 (38%), Positives = 45/78 (57%)
 Frame = +1

Query: 514 LAGTAGRKVRVYSDGIYDMFHQGHARQLQQAKTVFPNVYLIVGVCSDQLTHSRKGRTVMT 693
           +A ++  K R++ DG  D FH GH+  + QAK +     L++G+ SD+     KG  VMT
Sbjct: 1   MASSSNIKHRLWLDGCMDFFHYGHSNAILQAKQLGET--LVIGIHSDEEITLNKGPPVMT 58

Query: 694 EDERYEAVRHCXYVDEVV 747
            +ER  +   C +VDEVV
Sbjct: 59  LEERCLSANTCKWVDEVV 76



 Score = 34.7 bits (76), Expect = 0.017
 Identities = 15/68 (22%), Positives = 34/68 (50%)
 Frame = +1

Query: 544 VYSDGIYDMFHQGHARQLQQAKTVFPNVYLIVGVCSDQLTHSRKGRTVMTEDERYEAVRH 723
           +Y DG +D+F + H   L+    +FP + ++ G+ +D+    +    ++   ER   +  
Sbjct: 205 IYIDGDWDLFTEKHISALELCTRMFPGIPIMAGIFADEKCFEKPMLNLL---ERILNLLQ 261

Query: 724 CXYVDEVV 747
           C Y+  ++
Sbjct: 262 CKYISSIL 269


>SPCC24B10.17 |emp24||COPII-coated vesicle component Emp24
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 199

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -2

Query: 769 VDSHGASLRPHQRXCNVGRLRTS 701
           V  HG +L+PHQR C    LR +
Sbjct: 19  VFGHGITLKPHQRECFYENLRNN 41


>SPBC12C2.02c |ste20|ste16|sterility protein
           Ste20|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1309

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 13/46 (28%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = -1

Query: 710 SYLSSSVITVLPLRLC-VSWSLHTPTIR*TLGKTVFACCNCLACPW 576
           S ++ +++++L L +  V+ S++       L  T F+CC  L  PW
Sbjct: 257 SLITPTILSMLELNVSEVTASVYRLLRHLFLDATAFSCCQMLNLPW 302


>SPAC3H1.06c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 589

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +2

Query: 434 GPVSVRIPWRWLNGIRVTTGG 496
           G +S +  WRW+  I + TGG
Sbjct: 235 GAISQKASWRWIFFINLPTGG 255


>SPBC32H8.06 |mug93||TPR repeat protein, meiotically
           spliced|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 383

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +3

Query: 345 NGKLENSLNGYKKNGYVNHECTESVSLRH 431
           N  ++ SL+  K+  Y+  EC E+  LRH
Sbjct: 108 NTYIQKSLHRLKEVYYIYRECAETWQLRH 136


>SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 466

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 5/38 (13%)
 Frame = -3

Query: 243 IKKCSCIIFHCYYKSKISE-----AIKMLLQQCHVANV 145
           IKKC+ + F C +K   S+      IK + ++CH+ NV
Sbjct: 176 IKKCAEVNFLCIHKKLRSKRLTPLLIKEVTRRCHLENV 213


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,828,067
Number of Sequences: 5004
Number of extensions: 52553
Number of successful extensions: 130
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)