Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP24_F_N06
         (886 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces p...    28   2.0  
SPBC3B8.01c |arh1||NADPH-adrenodoxin reductase Arh1 |Schizosacch...    27   2.7  
SPAP27G11.15 |slx1||structure-specific endonuclease catalytic su...    26   6.2  
SPBC3D6.04c |mad1||mitotic spindle checkpoint protein Mad1|Schiz...    26   8.2  
SPAC19G12.15c |tpp1||trehalose-6-phosphate phosphatase Tpp1|Schi...    26   8.2  
SPCC777.08c |||HbrB family protein|Schizosaccharomyces pombe|chr...    26   8.2  

>SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 601

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +2

Query: 362 FASKSRDLRSIKGVELKMANKVYVHDGGKLDE 457
           FA + ++L   KGV+L M +   +HDG  L +
Sbjct: 79  FALRMKELADFKGVDLLMVDTGDLHDGNGLSD 110


>SPBC3B8.01c |arh1||NADPH-adrenodoxin reductase Arh1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 469

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +1

Query: 469 RFQGTSSIRTSKILISRRIQSQLSLLTIG*KKIPITALR 585
           RFQ T SIRT        I +QL + +IG K +P+  ++
Sbjct: 308 RFQITDSIRTDAESKFTTIPAQLFIRSIGYKSMPLPGMK 346


>SPAP27G11.15 |slx1||structure-specific endonuclease catalytic
           subunit |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 271

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +3

Query: 633 VNAIYFKGAWSSKFDERLTSDRDFYVSKDKTI 728
           V+A+ F+  W +    R T D DF   K KTI
Sbjct: 68  VSALKFEWNWQNLGISRYTKDCDFRSKKQKTI 99


>SPBC3D6.04c |mad1||mitotic spindle checkpoint protein
           Mad1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 689

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = -1

Query: 562 SSTQSLIDLAATVFFEKSI-FWTSELKTXPG 473
           SST  L+   +   FE+ I FW  E KT PG
Sbjct: 645 SSTMKLVGNPSGPEFERLIRFWCDERKTIPG 675


>SPAC19G12.15c |tpp1||trehalose-6-phosphate phosphatase
           Tpp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 817

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 12/33 (36%), Positives = 14/33 (42%)
 Frame = +3

Query: 75  DAGHKHEDNHLFVYYRHRGNGSRHKSL*CAQKW 173
           D   K E   +F YY  R  GS  +   CA  W
Sbjct: 653 DMSWKKEVRRIFQYYTDRTQGSSIEEKRCAMTW 685


>SPCC777.08c |||HbrB family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 422

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +3

Query: 522 NTVAAKSINDWVEENTNNRIKDLVNPDSLS 611
           +T +A SIN W+ +NT   I+ + N  SLS
Sbjct: 9   STSSASSIN-WIPKNTKTSIESVSNTISLS 37


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,264,159
Number of Sequences: 5004
Number of extensions: 64174
Number of successful extensions: 178
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)