Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP24_F_N02
         (884 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11B10.01 |alg2|SPBC32H8.14|mannosyltransferase complex subun...    27   3.6  
SPAC1687.20c |mis6||inner centromere protein Mis6|Schizosaccharo...    26   6.2  
SPAPB1A10.15 |||Arv1-like family protein|Schizosaccharomyces pom...    26   8.2  

>SPBC11B10.01 |alg2|SPBC32H8.14|mannosyltransferase complex subunit
           Alg2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 511

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = -3

Query: 738 CVLSASFLTFSITXKLT 688
           C++S SFLTF++  KLT
Sbjct: 493 CIVSVSFLTFTVYAKLT 509


>SPAC1687.20c |mis6||inner centromere protein
           Mis6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 672

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -1

Query: 677 WSWNVCLRLPLGALFQLHTNFITLLR 600
           +SW+V L   L  LFQL+   +T +R
Sbjct: 458 FSWDVSLAYQLSRLFQLYYKILTKIR 483


>SPAPB1A10.15 |||Arv1-like family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 220

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = -1

Query: 164 LVNVLASEPTQRTTK-AKIINFCISIVSFEL 75
           L N L++   +  TK AK++NFCI I  F +
Sbjct: 63  LFNSLSARTFRNLTKCAKVVNFCILISLFNV 93


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,902,440
Number of Sequences: 5004
Number of extensions: 53714
Number of successful extensions: 143
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)