Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP24_F_N01
         (893 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC126.08c |||lectin |Schizosaccharomyces pombe|chr 3|||Manual        63   4e-11
SPBC4F6.05c |||lectin |Schizosaccharomyces pombe|chr 2|||Manual        40   4e-04
SPCC63.07 |||tRNA guanylyltransferase |Schizosaccharomyces pombe...    29   0.89 
SPCC584.13 |||amino acid permease, unknown 14|Schizosaccharomyce...    27   4.8  
SPBC1539.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   8.3  

>SPCC126.08c |||lectin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 312

 Score = 63.3 bits (147), Expect = 4e-11
 Identities = 44/162 (27%), Positives = 73/162 (45%), Gaps = 3/162 (1%)
 Frame = +1

Query: 292 LAPSXRSQKGAIWTKQPINFDWWEVDIMFKITGRGR-IGADGLAFWYTTXRGDYTGEVFG 468
           L    ++Q+G I T+ P     +EV   F+I      +  DGLAF+    R    G VFG
Sbjct: 62  LTQDVQNQQGWISTRLPTPSSSFEVLFQFRINSESTSLFGDGLAFFLAAERAK-PGPVFG 120

Query: 469 SSDKWNGLGVIFDSFDNDNKHN-NPYIMAVVNDGTKVFDHKSDGTTQLLSGC-LRDFRNK 642
            +DK+NG G+  D+++N       P ++ +  DG   +D+++DG    ++ C   + R  
Sbjct: 121 FTDKFNGYGIFIDTYNNHRPGTLFPRVIVMKGDGHTPYDYENDGKANEIASCSALNVRGN 180

Query: 643 PFPTRAKIEYYMNTLTVYFHNGMTNNEQDYXLCFRXXNVVLP 768
            +    K++Y  N   + F          +  CF    V LP
Sbjct: 181 DY-NLGKLKYDKNAKKLRFEIAY-QGSSSFIKCFDLNEVELP 220


>SPBC4F6.05c |||lectin |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 384

 Score = 40.3 bits (90), Expect = 4e-04
 Identities = 23/76 (30%), Positives = 36/76 (47%)
 Frame = +1

Query: 301 SXRSQKGAIWTKQPINFDWWEVDIMFKITGRGRIGADGLAFWYTTXRGDYTGEVFGSSDK 480
           S  ++ G++W+   +    W++   F +           A WYT+  G   G VFG+SDK
Sbjct: 59  SNEARSGSLWSTSVLRQVGWQLSTSF-VAHVSENENTFFAIWYTSAVGS-EGPVFGASDK 116

Query: 481 WNGLGVIFDSFDNDNK 528
           W+GL +I    D   K
Sbjct: 117 WDGL-LISQEIDQTGK 131


>SPCC63.07 |||tRNA guanylyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 261

 Score = 29.1 bits (62), Expect = 0.89
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = +1

Query: 313 QKGAIWTKQPINFDWWEVDIMFKI 384
           +KG+IW ++PI+ +W + D  F +
Sbjct: 206 KKGSIWIREPIDQEWHQQDKKFSV 229


>SPCC584.13 |||amino acid permease, unknown 14|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 544

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -1

Query: 488 PFHLSDEPNTSPV*SPRXVVYQNA 417
           PFHLS+E + + V +PR +V  +A
Sbjct: 263 PFHLSEECSNASVAAPRAIVMTSA 286


>SPBC1539.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 386

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 5/70 (7%)
 Frame = -3

Query: 423 ERQAVSTYSASAGNLEHDVDLPPVKVN-GLF---GPYSPLLASXRR-RETHALXLMLLRF 259
           E+  V+  S     ++HD+ LPPV +   +F   G Y P   + +   E  A     L+ 
Sbjct: 238 EKLNVNANSLGKSFVKHDIPLPPVDLKLDIFEEVGEYDPFHENDKEPAELKAKDAFQLKG 297

Query: 258 HHTPKTAPIH 229
           HH    AP H
Sbjct: 298 HH-ELDAPYH 306


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,160,900
Number of Sequences: 5004
Number of extensions: 64245
Number of successful extensions: 150
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)