Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP24_F_M24
         (864 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0311 - 2753062-2753232,2753340-2753381,2754490-2754667,275...    46   5e-05
05_01_0383 + 2990812-2990855,2991364-2991463,2991554-2991622,299...    31   0.90 
04_03_0961 + 21263735-21263773,21264157-21264279,21266774-212668...    31   1.6  
04_04_0647 - 26928244-26928535,26931321-26931454,26932278-26933414     29   6.3  

>08_01_0311 -
           2753062-2753232,2753340-2753381,2754490-2754667,
           2755021-2755118,2755964-2756098,2756280-2756444,
           2756529-2756693,2757082-2757299,2758508-2758811
          Length = 491

 Score = 45.6 bits (103), Expect = 5e-05
 Identities = 33/134 (24%), Positives = 60/134 (44%), Gaps = 3/134 (2%)
 Frame = +1

Query: 457 LLKKNVSLVFIVCAPNL-HAQISVKALGIGK--HVVCDKPAGLCQAEALKMVRAAQYYPT 627
           LL   +    +V +PN+ H QI +  +   K  H++ +KP      +  K+V AA+    
Sbjct: 125 LLDSGLCDAVVVSSPNMTHYQILMDIISHAKPHHILVEKPLCTTVQDCQKVVEAAKQRSD 184

Query: 628 LISIVNHSLRFLPAFTHMRKCIQEGYLGDPEELTLIDVRVQMGPLIGDSYNWLCDDTMGG 807
           ++  V    R++P    +   ++ G LG   ++ ++ +R    P +    NW   +   G
Sbjct: 185 ILVQVGLEYRYMPPVAKLIDTVKSGTLG---QVRMVAIREHRFPFLVKVNNWNRFNCNSG 241

Query: 808 GTLTLVGSHVIDLV 849
           GTL     H  DL+
Sbjct: 242 GTLVEKCCHFFDLM 255


>05_01_0383 +
           2990812-2990855,2991364-2991463,2991554-2991622,
           2991724-2991960,2992045-2992228,2992307-2992442,
           2992529-2992691,2992958-2993108,2993154-2993278,
           2993349-2993504,2993792-2993860,2993951-2994019,
           2994127-2994264,2994626-2994773,2994856-2994866,
           2995212-2995352,2995441-2995569,2995860-2995899,
           2996020-2996348,2996902-2996919
          Length = 818

 Score = 31.5 bits (68), Expect = 0.90
 Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
 Frame = +1

Query: 394 EAEIAAKELKIPFFTNKIDD--VLLKKNVSLVFIVCAPNLHAQISVKALGIGKHVVCDKP 567
           E E  A+  ++PF  + +D   V +    S +F+    N   Q   KAL + KH+  ++ 
Sbjct: 141 EGEHVARVTEVPFSRSSLDHKAVFVVDTESKIFLFSGCNSSMQTRAKALDVVKHLKENRH 200

Query: 568 AGLCQ 582
            G C+
Sbjct: 201 CGRCE 205


>04_03_0961 +
           21263735-21263773,21264157-21264279,21266774-21266847,
           21266939-21267095,21267554-21267694,21267739-21267823,
           21268810-21268903,21269041-21269239,21269515-21269549,
           21270076-21270631,21270722-21270882,21271704-21271718,
           21273078-21273330,21273439-21273562,21273688-21273788,
           21274870-21274938,21275060-21275191,21275270-21275404,
           21275489-21275551,21275636-21275881,21276007-21276285
          Length = 1026

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = +3

Query: 423 NSFLHKQN*RRPSQE--ECEFSFHSLCPKSSCSDICQSTWYRKTC 551
           N FLH+++ R+  ++   CE  ++ L P S+C D C +      C
Sbjct: 73  NDFLHRRHKRQKEEDIAVCECQYNLLDPDSACGDRCLNVLTSTEC 117


>04_04_0647 - 26928244-26928535,26931321-26931454,26932278-26933414
          Length = 520

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = +1

Query: 550 VVCDKPAGLCQAEALKMVRAAQYYPTLISIVNHSLRFLPAFTHMR-KCIQEGY 705
           VVC+        E + + RA +   T++  V  +LRFLPA+   R  C  + Y
Sbjct: 108 VVCEPWPDAAAGEGIPVNRAYKRCMTMLRSVYATLRFLPAYRVFRLLCANQSY 160


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,393,657
Number of Sequences: 37544
Number of extensions: 408219
Number of successful extensions: 843
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 818
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 842
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2420970504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)