Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP24_F_M19
(892 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 36 0.010
SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Sc... 30 0.38
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 30 0.51
SPCC576.13 |swc5||chromatin remodeling complex subunit Swc5|Schi... 29 0.89
SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr ... 28 2.1
SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar ... 27 2.7
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 27 3.6
SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces p... 27 4.7
SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces... 26 6.3
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 35.5 bits (78), Expect = 0.010
Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Frame = +1
Query: 496 VTPKTKPARKSPXSLPPCWKTTEFTSRSCPPRTNST*SSITRKVLXMTVSST--VIAPLT 669
VTP P S S PP +T T S P +++ S T + T +ST V +
Sbjct: 301 VTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLPSTSTSCTTSTSIPPTGNSTTPVTPTVP 360
Query: 670 PSNTTGTLSPP 702
P++T+ T +PP
Sbjct: 361 PTSTSSTSTPP 371
Score = 34.3 bits (75), Expect = 0.024
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Frame = +1
Query: 496 VTPKTKPARKSPXSLP-PCWKTTEFTSRSCPPRTNST*SSITRKVLXMTVSSTVIAP-LT 669
+TP P S S+P P T+ + S P T ST + + + S+T + P +
Sbjct: 247 ITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTTSTSCTTSTSIPPTGNSTTPVTPTVP 306
Query: 670 PSNTTGTLSPP 702
P++T+ T +PP
Sbjct: 307 PTSTSSTSTPP 317
Score = 31.5 bits (68), Expect = 0.17
Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
Frame = +1
Query: 496 VTPKTKPARKSPXSLPPCWKTTEFTSRSCPPRTNST*SSITRKVLXMTVSSTV-IAPLTP 672
VTP P S S PP +T T S P +++ S T + T +ST + P P
Sbjct: 355 VTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLLSTSTSCTTSTSIPPTGNSTTPVTPTVP 414
Query: 673 SNTTGT 690
++ T
Sbjct: 415 PTSSST 420
Score = 29.9 bits (64), Expect = 0.51
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Frame = +1
Query: 496 VTPKTKPARKSPXSLP-PCWKTTEFTSRSCPPRTNST*SSITRKVLXMTVSSTVIAPLTP 672
+TP P S S+P P T+ + S P T ST S T + SS++ P+TP
Sbjct: 191 ITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTTST-SCTTSTSIPTGGSSSLSTPITP 249
Query: 673 S 675
+
Sbjct: 250 T 250
Score = 25.8 bits (54), Expect = 8.3
Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
Frame = +1
Query: 493 SVTPKTKPARKSPXSLPPCWKTTEFTSRSCPPRTNST*SSITRKVLXMT--VSSTVIAPL 666
S P T + + S+PP +T + + PP + S+ S+ + SS+ +
Sbjct: 330 SPLPSTSTSCTTSTSIPPTGNSTTPVTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLLST 389
Query: 667 TPSNTTGTLSPP 702
+ S TT T PP
Sbjct: 390 STSCTTSTSIPP 401
>SPAC343.04c |gnr1||heterotrimeric G protein beta subunit
Gnr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 507
Score = 30.3 bits (65), Expect = 0.38
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = -3
Query: 578 DLEVNSVVFQHGGKLXGDFLAGFVFGVTECNFVV 477
DLE N +V Q+ G G+FL G FG + FV+
Sbjct: 411 DLEENRIVRQYMGHKLGNFLIGSCFGGKDDTFVL 444
>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 29.9 bits (64), Expect = 0.51
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = +1
Query: 556 TTEFTSRSCPPRTNST*SSITRKVLXMTVSSTVIAPLTPSNTTGTLSPP 702
+T TS PP T+ ++ T ++T + P T NTT T +PP
Sbjct: 63 STNITSIVPPPSTSHNSTTTTVPPTTSMNTTTTVPPTTSLNTTTTTAPP 111
Score = 29.1 bits (62), Expect = 0.89
Identities = 14/55 (25%), Positives = 26/55 (47%)
Frame = +1
Query: 538 LPPCWKTTEFTSRSCPPRTNST*SSITRKVLXMTVSSTVIAPLTPSNTTGTLSPP 702
+PP + T+ + PP T+ ++ + ++T P T N+T T+ PP
Sbjct: 70 VPPPSTSHNSTTTTVPPTTSMNTTTTVPPTTSLNTTTTTAPPTTHVNSTTTVVPP 124
Score = 28.7 bits (61), Expect = 1.2
Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Frame = +1
Query: 496 VTPKTKPARKSPXSLPPCWKTTEFTSRSCPPRTN-ST*SSITRKVLXMTVSSTVIAPLTP 672
V P + + ++PP T+ T+ + PP T+ +T ++ + ++TV+ P T
Sbjct: 70 VPPPSTSHNSTTTTVPPT--TSMNTTTTVPPTTSLNTTTTTAPPTTHVNSTTTVVPPTTH 127
Query: 673 SNTTGTLSPP 702
NTT T+ PP
Sbjct: 128 VNTT-TVVPP 136
Score = 27.1 bits (57), Expect = 3.6
Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 2/73 (2%)
Frame = +1
Query: 490 HSVTPKTKPARKSPXSLPPCWKTTEF--TSRSCPPRTNST*SSITRKVLXMTVSSTVIAP 663
H+ T T P S + TT T+ + PP T+ ++ ++TV+ P
Sbjct: 77 HNSTTTTVPPTTSMNTTTTVPPTTSLNTTTTTAPPTTHVNSTTTVVPPTTHVNTTTVVPP 136
Query: 664 LTPSNTTGTLSPP 702
T NTT T+ PP
Sbjct: 137 TTHVNTT-TVVPP 148
>SPCC576.13 |swc5||chromatin remodeling complex subunit
Swc5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 215
Score = 29.1 bits (62), Expect = 0.89
Identities = 15/48 (31%), Positives = 26/48 (54%)
Frame = +3
Query: 222 ETAIAKCSEYLKEKKGEVIKEAVKRLIENGKRNTMDFAYQLWTKDGKE 365
ET K S K +K + + +++++ K NT++ A Q W+K KE
Sbjct: 128 ETPKKKHSLIRKRRKSPLDSSSAQKVLKKNKLNTLEQAQQNWSKYIKE 175
>SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1237
Score = 27.9 bits (59), Expect = 2.1
Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +3
Query: 189 QLYMSVVIGEY-ETAIAKCSEYLKEKKGEVIKEAVKRLIE 305
Q+++++V+ Y A+ EYL+EK I + K ++E
Sbjct: 556 QIFINIVLPNYIRAALVVAKEYLREKANADINDLTKDMLE 595
>SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar
membrane transporter Hmt1|Schizosaccharomyces pombe|chr
3|||Manual
Length = 830
Score = 27.5 bits (58), Expect = 2.7
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -3
Query: 176 VISSWCKCGVRSQRTHGEDEGKTKSVSSWRSGY 78
+I + C C V + T E + K V+SWR Y
Sbjct: 412 LIMTLCYCYVTVKITSWRTEARRKMVNSWRESY 444
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 27.1 bits (57), Expect = 3.6
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = +1
Query: 553 KTTEFTSRSCPPRTNST*SSITRKVLXMTVSSTVIAPLTPSNTTGTLSPP 702
+TTE T+ P T ++ S T ++ T T I P+ P N + ++S P
Sbjct: 853 ETTEGTATYTEPTTFTSTFSFTTTIIGGT---TTIIPVNPGNPSSSVSAP 899
>SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 417
Score = 26.6 bits (56), Expect = 4.7
Identities = 16/76 (21%), Positives = 34/76 (44%)
Frame = -1
Query: 325 MVFLLPFSIRRFTASLITSPFFSFRYSEHLAIAVSYSPMTTLIYSCSASTSSVLGASVAL 146
M F ++ T + +PF R+ HL S +T+ +Y+ + T ++++
Sbjct: 1 MRFFETLALALLTTGALAAPF---RHPHHLLNKRDVSVVTSKVYAYTTVTLEAAASAIST 57
Query: 145 EASAHTARTKAKQSQS 98
+A A T A +++
Sbjct: 58 NGAAKEAATAAGDAET 73
>SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 967
Score = 26.2 bits (55), Expect = 6.3
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Frame = -1
Query: 196 YSCSASTSSVLGASVALEA----SAHTARTKAKQSQSHLGAVVIFESKSTNN 53
YS + S VL +S EA SAH+A K S+S + +FES ++NN
Sbjct: 121 YSVAESPVPVLQSSAVSEADDMASAHSAHPSRKASRS----LRLFESSTSNN 168
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,001,344
Number of Sequences: 5004
Number of extensions: 60633
Number of successful extensions: 248
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 243
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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