Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP24_F_M19
         (892 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81062-8|CAD59145.1|  808|Caenorhabditis elegans Hypothetical pr...    36   0.051
Z84574-5|CAB06541.1|  846|Caenorhabditis elegans Hypothetical pr...    33   0.27 
AC024202-12|AAF36031.2|  143|Caenorhabditis elegans Hypothetical...    32   0.63 
U64835-5|AAG24196.1|  592|Caenorhabditis elegans Hypothetical pr...    31   0.84 
Z54342-6|CAA91148.1|  459|Caenorhabditis elegans Hypothetical pr...    31   1.1  
Z74029-4|CAA98429.2|  522|Caenorhabditis elegans Hypothetical pr...    30   1.9  
DQ523831-1|ABF71876.1|  522|Caenorhabditis elegans P21-activated...    30   1.9  
Z81062-7|CAB02942.1|  755|Caenorhabditis elegans Hypothetical pr...    29   4.5  
AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density l...    29   4.5  
Z68213-1|CAA92435.2|  487|Caenorhabditis elegans Hypothetical pr...    28   7.8  
Z22180-4|CAA80178.1|  312|Caenorhabditis elegans Hypothetical pr...    28   7.8  
U39854-2|AAA81077.2|  703|Caenorhabditis elegans Puf (pumilio/fb...    28   7.8  

>Z81062-8|CAD59145.1|  808|Caenorhabditis elegans Hypothetical
           protein F15A4.8b protein.
          Length = 808

 Score = 35.5 bits (78), Expect = 0.051
 Identities = 20/64 (31%), Positives = 31/64 (48%)
 Frame = +1

Query: 493 SVTPKTKPARKSPXSLPPCWKTTEFTSRSCPPRTNST*SSITRKVLXMTVSSTVIAPLTP 672
           +VT  T        ++P    TT   S + PP  ++T + +T+      V ST IAP+T 
Sbjct: 407 NVTSTTTAPTTESSAIPDVTSTTTTKSSTTPPVESTTTAPVTKSSSTPPVKSTTIAPVTM 466

Query: 673 SNTT 684
            +TT
Sbjct: 467 PSTT 470


>Z84574-5|CAB06541.1|  846|Caenorhabditis elegans Hypothetical
           protein F33E2.6 protein.
          Length = 846

 Score = 33.1 bits (72), Expect = 0.27
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
 Frame = +1

Query: 502 PKTKPARKSPXSLPPCWKTTE--FTSRSCPPRTNST 603
           PKT+P    P ++P CW+     F     PPR N+T
Sbjct: 418 PKTEPPTTEPPNIPYCWQQQSRLFAPSPPPPRVNNT 453


>AC024202-12|AAF36031.2|  143|Caenorhabditis elegans Hypothetical
           protein Y71H2B.1 protein.
          Length = 143

 Score = 31.9 bits (69), Expect = 0.63
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +3

Query: 192 LYMSVVIGEYETAIA-KCSEYLKEKKGEVIKEAVKRLIE 305
           LYM   +G+Y+   A KC +Y K+  G+   EA++  I+
Sbjct: 87  LYMQATVGDYDGNTALKCGQYWKKHSGKTQIEAIREYIK 125


>U64835-5|AAG24196.1|  592|Caenorhabditis elegans Hypothetical
           protein T09D3.3 protein.
          Length = 592

 Score = 31.5 bits (68), Expect = 0.84
 Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = +1

Query: 553 KTTEFTSRSCP-PRTNST*SSITRKVLXMTVSSTVIAPLTPSNTTGTLSPP 702
           KTT FT+   P P T ST +S T  V   + S+T     TP   T T + P
Sbjct: 434 KTTIFTTTPVPCPTTTSTTTSATTLVPTTSSSTTTTTTTTPVPVTSTTTEP 484


>Z54342-6|CAA91148.1|  459|Caenorhabditis elegans Hypothetical
           protein C08H9.11 protein.
          Length = 459

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
 Frame = +3

Query: 246 EYLKEKKGEVIKEA-VKRLIENGKRNTMDFAYQLWTKDGKEIVKSY--FPIQFRVIFTEQ 416
           EY +    E  +   VK ++   K+N +D     WT+   E +KSY  F  + R  FTE 
Sbjct: 187 EYSRLVSNETSRNVFVKSIVSFFKKNDIDGIEIFWTRPKYEDIKSYSSFIQELRSAFTE- 245

Query: 417 TVKLINKRDHHALKLI 464
             K  N+++ + + LI
Sbjct: 246 LQKRWNRKNEYIISLI 261


>Z74029-4|CAA98429.2|  522|Caenorhabditis elegans Hypothetical
           protein C45B11.1a protein.
          Length = 522

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 16/54 (29%), Positives = 28/54 (51%)
 Frame = -1

Query: 283 SLITSPFFSFRYSEHLAIAVSYSPMTTLIYSCSASTSSVLGASVALEASAHTAR 122
           ++I  P  SFRY+  L   ++ SPM ++  S S   S+     V + ++ H+ R
Sbjct: 76  TVIRGPSSSFRYNSPLPFGMTNSPMPSVARSNSLRISATASPVVNVSSARHSFR 129


>DQ523831-1|ABF71876.1|  522|Caenorhabditis elegans P21-activated
           kinase PAK-2 protein.
          Length = 522

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 16/54 (29%), Positives = 28/54 (51%)
 Frame = -1

Query: 283 SLITSPFFSFRYSEHLAIAVSYSPMTTLIYSCSASTSSVLGASVALEASAHTAR 122
           ++I  P  SFRY+  L   ++ SPM ++  S S   S+     V + ++ H+ R
Sbjct: 76  TVIRGPSSSFRYNSPLPFGMTNSPMPSVARSNSLRISATASPVVNVSSARHSFR 129


>Z81062-7|CAB02942.1|  755|Caenorhabditis elegans Hypothetical
           protein F15A4.8a protein.
          Length = 755

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 17/43 (39%), Positives = 25/43 (58%)
 Frame = +1

Query: 556 TTEFTSRSCPPRTNST*SSITRKVLXMTVSSTVIAPLTPSNTT 684
           TTE  S + PP  ++T + +T+      V ST IAP+T  +TT
Sbjct: 393 TTE--SSTTPPVESTTTAPVTKSSSTPPVKSTTIAPVTMPSTT 433


>AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density
           lipoprotein receptorrelated protein 2 protein.
          Length = 2192

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 17/55 (30%), Positives = 25/55 (45%)
 Frame = -3

Query: 278 DNLSLLFLQIFRAFGDSGLVFTNDDTHIQLLRQYVISSWCKCGVRSQRTHGEDEG 114
           DN + +  Q FR+ G S +     +  +       ISSW +C  +     GEDEG
Sbjct: 795 DNFTCMCAQGFRSEGRSCVSECKPNDFVCTKTYKCISSWWRCDGQDDCGDGEDEG 849


>Z68213-1|CAA92435.2|  487|Caenorhabditis elegans Hypothetical
           protein C01F6.2 protein.
          Length = 487

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
 Frame = +1

Query: 520 RKSPXSLPPCWKTTEFTSRSCPPRTNST*SSITRKV-LXMTVSSTVIAPLTPSN-TTGTL 693
           ++S  S P C   T   S+   P+T  T   I +KV +   V+   I P+ P     GT+
Sbjct: 104 QQSTVSTPRCLSPTNMGSKKSSPQTPKTPDVIRQKVPMNEPVNCVFIRPVIPKTIPEGTV 163

Query: 694 SPP 702
           + P
Sbjct: 164 AVP 166


>Z22180-4|CAA80178.1|  312|Caenorhabditis elegans Hypothetical
           protein K11H3.3 protein.
          Length = 312

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +3

Query: 270 EVIKEAVKRLIENGKRNTMDFAYQLWTKDG 359
           +V+K  ++ L     +NT+D A Q+W K+G
Sbjct: 242 DVVKTRMQGLEAKKYKNTLDCAMQIWKKEG 271


>U39854-2|AAA81077.2|  703|Caenorhabditis elegans Puf (pumilio/fbf)
           domain-containingprotein 9 protein.
          Length = 703

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
 Frame = +3

Query: 186 EQLYMSVVIGEYETAIAKCSEYLKEKKGEVIKEAVKRLIENGKRNTMDFAYQLWTKDGKE 365
           E+ Y   ++GE E  + KC   +K++ G      ++++IE  +   + F    +TK+  +
Sbjct: 440 EEKYQHEILGEMEGQVLKC---VKDQNG---NHVIQKVIERVEPERLQFIIDAFTKNNSD 493

Query: 366 IV--KSYFPIQFRVI 404
            V   S  P   RVI
Sbjct: 494 NVYTLSVHPYGCRVI 508


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,800,147
Number of Sequences: 27780
Number of extensions: 346567
Number of successful extensions: 1344
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1261
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1344
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2255353870
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)