Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP24_F_M17
         (1028 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       25   0.84 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   5.9  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   5.9  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   7.8  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   7.8  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 25.4 bits (53), Expect = 0.84
 Identities = 13/39 (33%), Positives = 15/39 (38%)
 Frame = +2

Query: 587 PXPTPXTXXXPPXXPXTXPNPXPHXPPPXPPXAXXPPXP 703
           P P+P      P    + PNP    PP  PP A     P
Sbjct: 23  PQPSPHQSPQAPQR-GSPPNPSQGPPPGGPPGAPPSQNP 60



 Score = 22.2 bits (45), Expect = 7.8
 Identities = 11/41 (26%), Positives = 11/41 (26%)
 Frame = +2

Query: 572 PXXXPPXPTPXTXXXPPXXPXTXPNPXPHXPPPXPPXAXXP 694
           P    P P P     P       P      PPP  P    P
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.6 bits (46), Expect = 5.9
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +2

Query: 923 TPXXPXPPXXPPPPT 967
           TP  P PP  PPPP+
Sbjct: 337 TPPKPAPP--PPPPS 349


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related protein
            STG-1 protein.
          Length = 397

 Score = 22.6 bits (46), Expect = 5.9
 Identities = 14/53 (26%), Positives = 20/53 (37%)
 Frame = -3

Query: 1020 SGGVXWCVGXXVGAXXXXVGGGGXXGGXGLXGVVSAXXGFLWGRXGXLXGRWV 862
            +GGV    G   G+       GG  GG G+   +SA    +        G W+
Sbjct: 27   AGGVV--TGASGGSIVVGANNGGGGGGLGIASGLSAMLSLVVVTVAISTGEWL 77


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 7.8
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = -2

Query: 457  GGGGGXXXXGVXGGXGG 407
            GGGG     G  GG GG
Sbjct: 1705 GGGGSLAGLGGLGGLGG 1721


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 7.8
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = -2

Query: 457  GGGGGXXXXGVXGGXGG 407
            GGGG     G  GG GG
Sbjct: 1701 GGGGSLAGLGGLGGLGG 1717


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.317    0.145    0.523 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,439
Number of Sequences: 438
Number of extensions: 8766
Number of successful extensions: 13
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 34346676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)