Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP24_F_M16
         (887 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC800.07c |tsf1||mitochondrial translation elongation factor E...    38   0.003
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    28   1.5  
SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase Ubp14|Sch...    27   4.7  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    26   6.2  
SPBC19G7.14c |cog5||Golgi transport complex subunit Cog5 |Schizo...    26   8.2  
SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomy...    26   8.2  

>SPBC800.07c |tsf1||mitochondrial translation elongation factor
           EF-Ts Tsf1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 299

 Score = 37.5 bits (83), Expect = 0.003
 Identities = 28/134 (20%), Positives = 50/134 (37%), Gaps = 10/134 (7%)
 Frame = +3

Query: 483 DKNHGALVELNCETDFVAKNDKFQKMIEDAAIASFKFA---HTKLQAKGPITKMELDSEQ 653
           D     + E+NCE+DFVA+   FQ +    A     +    H+    +  +    L  + 
Sbjct: 102 DGRKAVMAEINCESDFVAQTTPFQDLARRIASTFLHYLPTNHSSYSVEATLKNEILKHQA 161

Query: 654 LGTLHAEGGKK-------LSEILALFIGSVGENAVLRRAECWKANSEDVXIAGYTHPAPX 812
             + + E  +K       L E +       GE   ++R  C  A      I  ++H A  
Sbjct: 162 YVSKNHEANEKDVSSNVSLEEEIVKMTSFTGEKVQVQRLHCMNARVPSTAIGIFSHGAKQ 221

Query: 813 XXXXXXXGKYGALL 854
                  G+ G+++
Sbjct: 222 SSPLQQLGRIGSMV 235


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 25/96 (26%), Positives = 47/96 (48%)
 Frame = -2

Query: 751 SARLSTAFSPTEPIKSANISDNFFPPSACNVPSCSLSSSIFVIGPLACSLV*ANLNEAIA 572
           S+ LST+  P+    S++ S +    S+ +  S S SSS  +    + S    + +  I+
Sbjct: 232 SSSLSTSSIPSTSSSSSSTSSSLSSSSSSSTASSSSSSSSIISSSSSSSSSPTSTSSTIS 291

Query: 571 ASSIIF*NLSFLATKSVSQLSSTRAPWFLSNLTATN 464
           +SS    + S  +T S    SS+ +  F S L++++
Sbjct: 292 SSSSS--SSSPTSTSSTISSSSSSSSSFSSTLSSSS 325


>SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase
           Ubp14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 775

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +2

Query: 320 GYTIANCKKALEMHNNDADKAETWL 394
           G+T+A  +K L   NN+ ++A  W+
Sbjct: 652 GFTVAQARKGLLESNNNIERAVDWI 676


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 25/93 (26%), Positives = 45/93 (48%), Gaps = 1/93 (1%)
 Frame = -2

Query: 778 TSSLFAFQHSARLSTAFSPTEPIKSANISDNFFPPSACNVPSCSLSSSIFVIGPLACSLV 599
           +SS      +A  S   S +    S N + +  P S+    S + SSS+      + SL 
Sbjct: 71  SSSSLTSSSAASSSLTSSSSLASSSTNSTTSASPTSSSLTSSSATSSSLASSSTTSSSLA 130

Query: 598 *ANL-NEAIAASSIIF*NLSFLATKSVSQLSST 503
            +++ + ++A+SSI   +L+  +T S S  SS+
Sbjct: 131 SSSITSSSLASSSITSSSLASSSTTSSSLASSS 163


>SPBC19G7.14c |cog5||Golgi transport complex subunit Cog5
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 411

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
 Frame = +1

Query: 802 QRLXVLVIIPLENMGPC--SLTNSQTTXKT 885
           +R+  LV+IP EN+GP   ++ N  +T  T
Sbjct: 96  ERIRSLVVIPSENLGPLHEAIVNLHSTYMT 125


>SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 794

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = -2

Query: 532 TKSVSQL-SSTRAPWFLSNLTATNPLEGRPAS 440
           T+++S   SST   W + NL   +P  G+P S
Sbjct: 488 TEAISNYDSSTGRTWDICNLNKLHPYSGKPVS 519


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,476,097
Number of Sequences: 5004
Number of extensions: 71777
Number of successful extensions: 203
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 203
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)