Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP24_F_M16
         (887 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0591 - 19051748-19051807,19053044-19053133,19053238-190533...    50   2e-06
12_02_0669 + 21695391-21697443,21698319-21699030,21699169-21699775     43   4e-04
02_05_0033 + 25250312-25250563,25251469-25251540,25251925-252520...    33   0.40 
11_06_0021 + 19314211-19314311,19315202-19315307,19317135-193174...    29   4.9  
09_04_0640 - 19166953-19167285,19167631-19168449,19169057-191691...    29   6.5  

>08_02_0591 -
           19051748-19051807,19053044-19053133,19053238-19053363,
           19053920-19054104,19054644-19054818,19057111-19057191,
           19057242-19057265,19057581-19057753,19057847-19058123,
           19059093-19059149,19059604-19059699
          Length = 447

 Score = 50.0 bits (114), Expect = 2e-06
 Identities = 39/129 (30%), Positives = 57/129 (44%), Gaps = 11/129 (8%)
 Frame = +3

Query: 456 SRGLVAVKFDKNHGALVELNCETDFVAKNDKFQKMIEDAAIASFK---FAHTKLQAKG-- 620
           + GL+A+  D+   A+VELNCETDFVA+ND FQ ++    +  FK    A   L A+   
Sbjct: 167 AEGLLAIAQDEKRAAVVELNCETDFVARNDVFQYLL--VLVRGFKASSLAKLALSARDPG 224

Query: 621 ----PITKMELDSEQLGTLHAE--GGKKLSEILALFIGSVGENAVLRRAECWKANSEDVX 782
               P     L++  +   H +  G   +   +      VGEN   RR       +  V 
Sbjct: 225 ELVFPFGPDYLENLNVNLDHPKLSGETTVQSAVTEVAAMVGENVKFRRGFIMSTTAHGV- 283

Query: 783 IAGYTHPAP 809
           +  Y H  P
Sbjct: 284 VCSYMHTCP 292


>12_02_0669 + 21695391-21697443,21698319-21699030,21699169-21699775
          Length = 1123

 Score = 42.7 bits (96), Expect = 4e-04
 Identities = 17/42 (40%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
 Frame = +3

Query: 456  SRGLVAVKFDKNH-GALVELNCETDFVAKNDKFQKMIEDAAI 578
            + GL+      N  G ++E+N ETDFVA+N+KF++++ D A+
Sbjct: 982  AEGLIGAYIHDNRIGCMIEINSETDFVARNEKFKELVNDLAM 1023



 Score = 41.9 bits (94), Expect = 7e-04
 Identities = 15/32 (46%), Positives = 25/32 (78%)
 Frame = +3

Query: 483 DKNHGALVELNCETDFVAKNDKFQKMIEDAAI 578
           D   G L+E+NCETDFV++ D F+++++D A+
Sbjct: 751 DSRIGVLIEVNCETDFVSRGDIFKELVDDLAM 782



 Score = 41.1 bits (92), Expect = 0.001
 Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
 Frame = +2

Query: 263 SPAYKAAESSLLAKLRKKTGYTIANCKKALEMHNNDADKAETWLHEQAQAMGWAKATKLA 442
           S A      +L+ +LR+ TG  + +CKKAL     D +KA+ +L ++    G A A K A
Sbjct: 681 STATATISPALVKQLREATGAGMMDCKKALAESGGDIEKAQEFLRKK----GLAAADKRA 736

Query: 443 GRTALQG-VGS 472
           GR   +G +GS
Sbjct: 737 GRATAEGRIGS 747



 Score = 33.9 bits (74), Expect = 0.17
 Identities = 19/63 (30%), Positives = 35/63 (55%)
 Frame = +2

Query: 278  AAESSLLAKLRKKTGYTIANCKKALEMHNNDADKAETWLHEQAQAMGWAKATKLAGRTAL 457
            A  ++L+ +LR +TG  + +CKKAL     D  +A+ +L ++    G + A K + R   
Sbjct: 927  AISAALVKQLRDETGAGMMDCKKALAETGGDIQQAQEFLRKK----GLSSADKKSSRLTA 982

Query: 458  QGV 466
            +G+
Sbjct: 983  EGL 985


>02_05_0033 +
           25250312-25250563,25251469-25251540,25251925-25252069,
           25253449-25253558,25253665-25254079,25254166-25254413
          Length = 413

 Score = 32.7 bits (71), Expect = 0.40
 Identities = 23/68 (33%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
 Frame = +2

Query: 131 KEKPRLCVELMKIQ*NFKIKSVHTR*NYTVTYKMIFQLIRRIHTSPAYKAAESSLLA-KL 307
           + K +  +E ++ +   KI  +  R NY +T     QLI++    PA KAA +S+LA KL
Sbjct: 158 ERKDQKTLEKLRAERKAKIDELKERTNYYLTQ----QLIQKYDLDPAAKAAAASVLASKL 213

Query: 308 RKKTGYTI 331
            ++TG  +
Sbjct: 214 GEETGLKV 221


>11_06_0021 +
           19314211-19314311,19315202-19315307,19317135-19317412,
           19318587-19318692,19318812-19319159,19319237-19319313,
           19319392-19319516,19319884-19320135,19320314-19320336
          Length = 471

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 23/87 (26%), Positives = 38/87 (43%), Gaps = 1/87 (1%)
 Frame = +3

Query: 534 AKNDKFQKMIEDAAIASFKFAHTKLQAKGPITKM-ELDSEQLGTLHAEGGKKLSEILALF 710
           AK+D+  K   + A  +         A  P+ K  E D +Q G      G  +SE     
Sbjct: 89  AKDDRSSKEESEDAQPTSDSNKISSNADEPVAKSSETDRDQEGDKDHSSGSDISEATI-- 146

Query: 711 IGSVGENAVLRRAECWKANSEDVXIAG 791
                +NA+++RA  ++ NSE + + G
Sbjct: 147 -----KNAIVKRASYFRENSETITLQG 168


>09_04_0640 -
           19166953-19167285,19167631-19168449,19169057-19169163,
           19170070-19170154
          Length = 447

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +3

Query: 480 FDKNHGALVELNCETDFVAKNDKFQKMIEDAAIASFK 590
           F+K+   L E  CETDF++K D   K      + +FK
Sbjct: 101 FNKDTLGLDEHVCETDFISKVDHILKRHSGTCVKTFK 137


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,705,592
Number of Sequences: 37544
Number of extensions: 466144
Number of successful extensions: 1139
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1138
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2495239620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)